.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (RGB_RLP_lowDV_1ststrand_42C_3)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/e64a0f91651eae7f6755ed9cae9550/.command.err
Size: 11.8 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (RGB_RLP_lowDV_1ststrand_42C_3)
Attempt
Content

Loading annotation
Read 3041209 records
Warning in parseGtfAttribute("exon_number", exons) :
  Failed to parse 'exon_number' attribute of 8 record(s).
Loading protein domains
Read 134356 records
Drawing fusion #1: SREBF1:NCOR1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #2: PCDHA6:PCDHAC1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #3: PCDHA6:PCDHAC2
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #4: SRGAP2B:SEC22B3P
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #5: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #6: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #7: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #8: SUZ12P1:AFMID
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #9: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #10: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #11: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #12: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #13: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #14: TVP23C:CDRT4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #15: GTF2I:CLIP2
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #16: ASPH:LINC02842
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #17: ASPH:LINC02842
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #18: CAB39:ARFIP1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #19: METRNL:CTDNEP1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #20: LHFPL5:CLPSL1
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #21: SPATA6:AGBL4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Drawing fusion #22: SPATA6:AGBL4
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_3.Aligned.sortedByCoord.out.bam.bai
Done