.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (RGB_RLP_lowDV_1ststrand_27C_4)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/30bebce0d6372cdd4c9bd541932efb/.command.sh
Size: 409 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (RGB_RLP_lowDV_1ststrand_27C_4)
Attempt

Content

#!/bin/bash -euo pipefail
bam_stat.py \
    -i RGB_RLP_lowDV_1ststrand_27C_4.Aligned.sortedByCoord.out.bam RGB_RLP_lowDV_1ststrand_27C_4.Aligned.sortedByCoord.out.bam.bai \
     \
    > RGB_RLP_lowDV_1ststrand_27C_4.bam_stat.txt

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT":
    rseqc: $(bam_stat.py --version | sed -e "s/bam_stat.py //g")
END_VERSIONS