.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (RGB_RLP_lowDV_1ststrand_42C_4)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e8722813c33a25f02544b7c68cedb7/.command.log
Size: 819 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (RGB_RLP_lowDV_1ststrand_42C_4)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/aba00266e1c106468f10b39c62a54b/RGB_RLP_lowDV_1ststrand_42C_4.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e8722813c33a25f02544b7c68cedb7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e8722813c33a25f02544b7c68cedb7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/19868eddcd49fed341e88259cc10a5/RGB_RLP_lowDV_1ststrand_42C_4.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory