Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/b42e1a6821f2c1b07713b1ebcdfa1d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/b42e1a6821f2c1b07713b1ebcdfa1d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/5f035e012996be81561c85e8f741f9/RGB_RLP_lowDV_1ststrand_40C_4
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/89fab6fa946dde4c0c8881f34c2c17/RGB_RLP_lowDV_1ststrand_40C_4.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: RGB_RLP_lowDV_1ststrand_40C_4/abundance.h5
Successfully converted RGB_RLP_lowDV_1ststrand_40C_4/abundance.h5 to RGB_RLP_lowDV_1ststrand_40C_4_kallisto_mqc.tsv
  Sample: RGB_RLP_lowDV_1ststrand_40C_4
  Mean Fragment Length: 123.0 bp
  Median Fragment Length: 114.0 bp
  pct_mito_est_counts: 0.012%
  pct_ribo_est_counts: 0.885%
  pct_hk_est_counts: 0.352%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.023%
  pct_ribo_tpm: 2.822%
  pct_hk_tpm: 0.575%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.024%