Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/06ed62ea3460fcd6ddf1fddb3189ad/RGB_RLP_lowDV_1ststrand_42C_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/c2c47b304766f298dcbac904dfbe02/RGB_RLP_lowDV_1ststrand_42C_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/96bed949f14f43d57e4f4706d1fa6a/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/ebdaf12aee1bd00faa9a1e7b29eac6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/ebdaf12aee1bd00faa9a1e7b29eac6/.command.run
==> STAGING COMPLETE (5 inputs)

processing ref_annot.bed ... Done
[W::hts_idx_load3] The index file is older than the data file: RGB_RLP_lowDV_1ststrand_42C_1.Aligned.sortedByCoord.out.bam.bai
processing RGB_RLP_lowDV_1ststrand_42C_1.Aligned.sortedByCoord.out.bam ... Finished