File Info

Filename
rna_s1221_S42.Log.final.out
Full Path
s3://natera-platform-sandbox/users/smarinkovic/rnapipeline_exon_skipping_vcf_bgzip_test/star_alignment/rna_s1221_S42.Log.final.out
Size
2.0 KB
Published
Jun 08, 2026 8:54 AM
                                 Started job on |	Jun 08 15:50:54
                             Started mapping on |	Jun 08 15:52:35
                                    Finished on |	Jun 08 15:53:59
       Mapping speed, Million of reads per hour |	425.49

                          Number of input reads |	9928008
                      Average input read length |	276
                                    UNIQUE READS:
                   Uniquely mapped reads number |	9366546
                        Uniquely mapped reads % |	94.34%
                          Average mapped length |	276.82
                       Number of splices: Total |	11193262
            Number of splices: Annotated (sjdb) |	11078349
                       Number of splices: GT/AG |	11092503
                       Number of splices: GC/AG |	80193
                       Number of splices: AT/AC |	10074
               Number of splices: Non-canonical |	10492
                      Mismatch rate per base, % |	0.15%
                         Deletion rate per base |	0.00%
                        Deletion average length |	1.14
                        Insertion rate per base |	0.00%
                       Insertion average length |	2.09
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	420938
             % of reads mapped to multiple loci |	4.24%
        Number of reads mapped to too many loci |	952
             % of reads mapped to too many loci |	0.01%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	16078
       % of reads unmapped: too many mismatches |	0.16%
            Number of reads unmapped: too short |	51556
                 % of reads unmapped: too short |	0.52%
                Number of reads unmapped: other |	7848
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	98991
                            % of chimeric reads |	1.00%