rna_s1221_S42.bam_stat.txt - Workflow Tracker

File Info

Filename: rna_s1221_S42.bam_stat.txt
Full Path: s3://natera-platform-sandbox/users/smarinkovic/rnapipeline_exon_skipping_vcf_bgzip_test/QC/rseqc/rna_s1221_S42.bam_stat.txt
Size: 841 bytes
Workflow Run: rnapipeline_exon_skipping_vcf_bgzip_test
Published: Jun 08, 2026 8:56 AM

Content

#==================================================
#All numbers are READ count
#==================================================

Total records:                          23428759

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        3494199
Unmapped reads:                         83068
mapq < mapq_cut (non-unique):           990976

mapq >= mapq_cut (unique):              18860516
Read-1:                                 9434090
Read-2:                                 9426426
Reads map to '+':                       9430465
Reads map to '-':                       9430051
Non-splice reads:                       8959306
Splice reads:                           9901210
Reads mapped in proper pairs:           18813680
Proper-paired reads map to different chrom:0