.command.sh - Workdir - COPY_INPUT_TO_OUTDIR (copy_input)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a4ffcf37bd081848a1f850e40f701b/.command.sh
Size: 474 bytes
Task: COPY_INPUT_TO_OUTDIR (copy_input)
Attempt

Content

#!/bin/bash -euo pipefail
mkdir -p input_sheets

# Copy samplesheet to input_sheets/ (same filename) — only this file is staged
cp "cgp_rna_exp0022_v4_v2_sample_type.csv" "input_sheets/"

# Copy metadata to input_sheets/metadata.csv if provided (when metadata is a different file from samplesheet)
cp 'metadata_staged' input_sheets/metadata.csv

cat <<-END_VERSIONS > versions.yml
"COPY_INPUT_TO_OUTDIR":
    python: $(python3 --version | sed 's/Python //g')
END_VERSIONS