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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b4d1ff45959da04f512eedab030e44/rna_s1221_S42.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/433e59fb596655d618a5931be42319/rna_s1221_S42.junction_annotation.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/134286cfb120cdb3dd694cae249b55/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/5bd9619a6e0239c36fd35ce2bd482b/rna_s1221_S42.attempt1.command.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/14a85f1442859e6504adb5f2128ebd/rna_s1221_S42_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/be/1a3fd18f5d78aea77aab671bfe13f7/workflow_summary_mqc.yaml
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/5bd9619a6e0239c36fd35ce2bd482b/rna_s1221_S42.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/c5c8892e1eae540505cf6380fa6703/rna_s1221_S42.pos.DupRate.xls
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/a5c4aff0aaea0d2de164209fa9153b/rna_s1221_S42_rseqc_extra_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b9ae4d86d1ff72c9318b12651abdbb/rna_s1221_S42_preseq_mqc.tsv
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/77df52a147ead214dd811b891119b1/rna_s1221_S42.infer_experiment.txt
==> STAGING COMPLETE (31 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.yuw5oRLYTK
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 68/68  
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | rna_contamination: Found 1 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 1 General Statistics columns
|    custom_content | seqtools_metrics: Found 1 General Statistics columns
|    custom_content | preseq_metrics: Found 1 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|          kallisto | Found 1 reports
|            picard | Found 1 MarkDuplicates reports
|            preseq | Found 1 reports
|             rseqc | Found 1 read_distribution reports
|             rseqc | Found 1 inner_distance reports
|             rseqc | Found 1 read_duplication reports
|             rseqc | Found 1 junction_annotation reports
|             rseqc | Found 1 junction_saturation reports
|             rseqc | Found 1 infer_experiment reports
|             rseqc | Found 1 bam_stat reports
|              star | Found 1 reports and 1 gene count files
|             fastp | Found 1 reports
|            fastqc | Found 4 reports
|            fastqc | Found 2 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete