AIH curated blacklist: matched 2 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 25
Pass (FILTER=PASS): 13 (52.0%)
Fail (FILTER=FAIL): 12 (48.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 2
All 2 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high);aih_curated_blacklist: 2
confidence_below_min(medium<high): 2
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 1
confidence_below_min(low<high): 1
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1
Breakdown by confidence:
high: 13 pass, 0 fail (total: 13)
low: 0 pass, 5 fail (total: 5)
medium: 0 pass, 7 fail (total: 7)
Arriba filter: 25 rows -> 13 PASS; wrote rna_s1221_S42.arriba.fusions.filtered.tsv and rna_s1221_S42.arriba.fusions.filtered_pass_only.tsv
Summary written to: rna_s1221_S42.arriba.fusions.filter_summary.txt