File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/6d66413caf155040e34e7d9758a89f/.command.log
Size
975 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/6d66413caf155040e34e7d9758a89f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/6d66413caf155040e34e7d9758a89f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/7151dc23db488197db826a53ef1ff7/rna_s1221_S42.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/899c5b55ffa60168ec4a10dc7d2711/rna_s1221_S42
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: rna_s1221_S42/abundance.h5
Successfully converted rna_s1221_S42/abundance.h5 to rna_s1221_S42_kallisto_mqc.tsv
  Sample: rna_s1221_S42
  Mean Fragment Length: 176.1 bp
  Median Fragment Length: 161.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 4.719%
  pct_hk_est_counts: 2.835%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.009%
  pct_ribo_tpm: 11.334%
  pct_hk_tpm: 3.206%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.823%