.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/14f4b820c9598d568432a6b8d13afc/.command.sh
Size: 287 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42)
Attempt

Content

#!/bin/bash -euo pipefail
cancer_introns_to_vcf.py \
    --input rna_s1221_S42.cancer.introns

bgzip rna_s1221_S42.exon_skipping.vcf

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF":
    python: $(python --version | sed 's/Python //g')
END_VERSIONS