Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/b3cb149528ad12194e58c0c27d041a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/3b02cd5cd202d6b7041639c7da8492/rna_s1221_S42.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/b3cb149528ad12194e58c0c27d041a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory