succeeded COPY_INPUT_TO_OUTDIR (copy_input) 3s 2s - - 3.1 MB 168% 70.8 KB 1.1 KB 0 bytes 16.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (rna_s1221_S42) 4s 1s 0s 2s 12.9 MB 503% 38.7 MB 130.6 KB 0 bytes 148.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1221_S42) 1m 30s 2s 1m 7s 21s 4.8 GB 101% 5.2 GB 65.1 MB 0 bytes 65.1 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42) 7s 6s - - 12.5 MB 81% 1.1 MB 5.8 KB 0 bytes 16.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS (rna_s1221_S42) 2s 1s 0s 0s 0 bytes 139% 65.4 KB 937 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS (rna_s1221_S42) 1m 38s 14s 12s 1m 11s 615.3 MB 136% 224.0 MB 19.4 MB 170.5 MB 19.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT (rna_s1221_S42) 19s 2s 8s 9s 24.0 MB 155% 926.4 MB 2.3 MB 0 bytes 2.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:STAR_ALIGNMENT (rna_s1221_S42) 5m 26s 35s 3m 27s 1m 24s 35.6 GB 1124% 45.8 GB 9.8 GB 2.8 GB 9.6 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1221_S42) 1m 23s 10s 1m 8s 5s 658.6 MB 201% 1.2 GB 4.0 MB 0 bytes 4.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (rna_s1221_S42) 22s 17s 3s 2s 104.4 MB 100% 21.4 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (rna_s1221_S42) 3m 3s 2s 2m 54s 7s 2.2 GB 105% 1.5 GB 11.2 MB 0 bytes 11.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (rna_s1221_S42) 9m 44s 1s 8m 21s 1m 21s 35.9 GB 219% 40.2 GB 3.6 GB 1.5 GB 99.4 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (rna_s1221_S42) 5s 2s 1s 2s 184.3 MB 856% 34.1 MB 46.7 KB 0 bytes 52.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (rna_s1221_S42) 16s 10s 2s 3s 127.7 MB 252% 70.9 MB 25.1 MB 0 bytes 25.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf) 33s 3s 22s 8s 3.1 GB 101% 1.3 GB 27.7 MB 4.0 KB 27.7 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz) 3m 0s 1s 2m 53s 6s 2.7 GB 176% 1.7 GB 605.9 MB 0 bytes 605.9 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1221_S42) 2m 21s 2s 2m 8s 11s 1.4 GB 266% 1.5 GB 19.2 MB 1.4 GB 19.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42) 3s 2s 0s 0s 12.6 MB 1349% 4.6 MB 3.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_TX2GENE_QC (rna_s1221_S42) 5s 2s 1s 2s 209.3 MB 262% 44.2 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:MULTIQC 27s 19s 3s 4s 83.2 MB 536% 71.6 MB 22.9 MB 0 bytes 23.1 MB 1
45 items found |