Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/7e00883c5855145cdfdb184e7505f2/rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/1e2fcf1754af77a22a09e2e77c303e/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/a98f7ef2c8f3f82c4f6751c92f57e9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/a98f7ef2c8f3f82c4f6751c92f57e9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/6ed28fc3a27c2ed6889fd01426200d/rna_s1221_S42.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 11220609
[W::hts_idx_load3] The index file is older than the data file: rna_s1221_S42.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	11220609
Known Splicing Events:	11135531
Partial Novel Splicing Events:	59611
Novel Splicing Events:	23234
Filtered Splicing Events:	2233

Total splicing  Junctions:	176239
Known Splicing Junctions:	148697
Partial Novel Splicing Junctions:	22064
Novel Splicing Junctions:	5478

===================================================================
Create BED file ...
Create Interact file ...