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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/4130d7c1024fa117ca311668103ed6/rna_s1221_S42_collectinsertsize.txt
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/08c5305ce8f539278f3e9ce6c55d3a/rna_s1221_S42.attempt1.command.log
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==> STAGING COMPLETE (33 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.GKx3kK7ey5
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 70/70  
|    custom_content | preseq_metrics: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|    custom_content | seqtools_metrics: Found 1 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 1 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | rna_contamination: Found 1 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 1 General Statistics columns
|          kallisto | Found 1 reports
|            picard | Found 1 InsertSizeMetrics reports
|            picard | Found 1 MarkDuplicates reports
|            picard | Found 1 RnaSeqMetrics reports
|            preseq | Found 1 reports
|             rseqc | Found 1 read_distribution reports
|             rseqc | Found 1 inner_distance reports
|             rseqc | Found 1 read_duplication reports
|             rseqc | Found 1 junction_annotation reports
|             rseqc | Found 1 junction_saturation reports
|             rseqc | Found 1 infer_experiment reports
|             rseqc | Found 1 bam_stat reports
|              star | Found 1 reports and 1 gene count files
|             fastp | Found 1 reports
|            fastqc | Found 4 reports
|            fastqc | Found 2 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete