Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/22b4395d42f8c4c065db405d0cd95a/rna_s1221_S42_combined_fusions_arriba_visualisation.pdf Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/a33e60f4b8576cb59c07e97e625e1f/rna_s1221_S42_preseq_mqc.tsv Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/4130d7c1024fa117ca311668103ed6/rna_s1221_S42_collectinsertsize.txt Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/f3d5ee05af1830352904612f23f164/rna_s1221_S42.md.bam.metrics Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/08c5305ce8f539278f3e9ce6c55d3a/rna_s1221_S42.attempt1.command.log Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/25f7461ec05409e9ca504aeea2b247/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/b2d1fa9a8e5d7f3470333877051c1f/rna_s1221_S42_seqtool_mqc.tsv Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/66/4edaa65dd38b2a7ca2c0c372f3ad07/workflow_summary_mqc.yaml Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/eb6217907fd7da0a6758992e46365c/rna_s1221_S42.fastp.html Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/0285de58820a0c29ea698e61e2e0a9/rna_s1221_S42.inner_distance_freq.txt Downloading: s3://natera-platform-sandbox/users/smarinkovic/rnapipeline_updated_outputs_test1/pipeline_info/nf_core_pipeline_software_mqc_versions.yml Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/08c5305ce8f539278f3e9ce6c55d3a/rna_s1221_S42.lc_extrap.txt Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/4a6738b72653a8444bbe026bec4235/rna_s1221_S42.junctionSaturation_plot.r Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/45959416edeb5225ac49e3a388daa5/rna_s1221_S42.pos.DupRate.xls Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/357330e5083a56cdc7d0c173fadbb4/rna_s1221_S42_rseqc_extra_mqc.tsv Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/eb6217907fd7da0a6758992e46365c/rna_s1221_S42.fastp.json Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/0b670df435f4a7c009d22250b7df7b/rna_s1221_S42_2_fastqc.zip Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/8fb7e73a61cc0c507e115d13096acf/rna_s1221_S42_trimmed_1_fastqc.zip Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/0d2119cd7f5534684cb777f0a96926/rna_s1221_S42.bam_stat.txt Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/8fb7e73a61cc0c507e115d13096acf/rna_s1221_S42_trimmed_2_fastqc.zip Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/0b670df435f4a7c009d22250b7df7b/rna_s1221_S42_1_fastqc.zip Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/366f72e33fa34413085b66ee25a525/rna_s1221_S42_rna_metrics.txt Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/6ed28fc3a27c2ed6889fd01426200d/rna_s1221_S42.Log.final.out Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/a98f7ef2c8f3f82c4f6751c92f57e9/rna_s1221_S42.junction_annotation.log Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-49dc07aa-b8ac-4341-9474-423198a4e165/4a/54080deb7eefb36c537e13e9083efb/multiqc_config.yml Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/310463abb864cd87d114ab13053563/rna_s1221_S42.log Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/6ed28fc3a27c2ed6889fd01426200d/rna_s1221_S42.ReadsPerGene.out.tab Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/9e2a233ad9f3ec7826780d518e351d/rna_s1221_S42.read_distribution.txt Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/6d/30270716f90f114eaf4a80a48f1429/methods_description_mqc.yaml Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/f2542b226ca7397bb61c236f1ec676/rna_s1221_S42_contamination_mqc.tsv Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/25f7461ec05409e9ca504aeea2b247/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/42be4f334d90d181de7aaf15dbb922/rna_s1221_S42.infer_experiment.txt Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/4a604c7f77c6deffa1a4830db62fd2/rna_s1221_S42_kallisto_mqc.tsv ==> STAGING COMPLETE (33 inputs) /// MultiQC 🔍 | v1.21 | multiqc | MultiQC Version v1.35 now available! | multiqc | Module(s) in config.run_modules are unknown: arriba | multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq | multiqc | Search path : /tmp/nxf.GKx3kK7ey5 | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 70/70 | custom_content | preseq_metrics: Found 1 General Statistics columns | custom_content | nf-core-rnafusion-summary: Found 1 sample (html) | custom_content | seqtools_metrics: Found 1 General Statistics columns | custom_content | rseqc_extra_metrics: Found 1 General Statistics columns | custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html) | custom_content | rna_contamination: Found 1 General Statistics columns | custom_content | kallisto_qc_metrics: Found 1 General Statistics columns | kallisto | Found 1 reports | picard | Found 1 InsertSizeMetrics reports | picard | Found 1 MarkDuplicates reports | picard | Found 1 RnaSeqMetrics reports | preseq | Found 1 reports | rseqc | Found 1 read_distribution reports | rseqc | Found 1 inner_distance reports | rseqc | Found 1 read_duplication reports | rseqc | Found 1 junction_annotation reports | rseqc | Found 1 junction_saturation reports | rseqc | Found 1 infer_experiment reports | rseqc | Found 1 bam_stat reports | star | Found 1 reports and 1 gene count files | fastp | Found 1 reports | fastqc | Found 4 reports | fastqc | Found 2 reports | multiqc | Report : multiqc_report.html | multiqc | Data : multiqc_data | multiqc | Plots : multiqc_plots | multiqc | MultiQC complete