File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/8780196f460f38ab770b0baed7d542/.command.log
Size
3.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (rna_s1221_S42)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-49dc07aa-b8ac-4341-9474-423198a4e165/54/87fc97ba164d8fb1c2628d335ffa00/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/8780196f460f38ab770b0baed7d542/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/0a39febf399db38fd897b142c41a92/rna_s1221_S42.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/c720dab334b535b99f4a742ffe4e23/rna_s1221_S42.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/8780196f460f38ab770b0baed7d542/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
FGFR3--TACC3
starfusion
arriba
KIF5B--RET
starfusion
arriba
LMNA--NTRK1
starfusion
arriba
FGFR3--BAIAP2L1
starfusion
arriba
ETV6--NTRK3
starfusion
arriba
CD74--ROS1
starfusion
EGFR--SEPTIN14
starfusion
arriba
TFG--NTRK1
starfusion
arriba
SLC45A3--BRAF
starfusion
arriba
TPM3--NTRK1
starfusion
arriba
PAX8--PPARG
starfusion
arriba
NCOA4--RET
starfusion
arriba
CCDC6--RET
starfusion
arriba
AC015911.9--SLFN12L
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   0%|          | 0/14 [00:00<?, ?it/s]
Processing FGFR3--TACC3:   7%|▋         | 1/14 [00:00<00:01,  9.06it/s]
Processing KIF5B--RET:   7%|▋         | 1/14 [00:00<00:01,  9.06it/s]  
Processing KIF5B--RET:  14%|█▍        | 2/14 [00:00<00:01,  9.35it/s]
Processing LMNA--NTRK1:  14%|█▍        | 2/14 [00:00<00:01,  9.35it/s]
Processing LMNA--NTRK1:  21%|██▏       | 3/14 [00:00<00:01,  9.46it/s]
Processing FGFR3--BAIAP2L1:  21%|██▏       | 3/14 [00:00<00:01,  9.46it/s]
Processing FGFR3--BAIAP2L1:  29%|██▊       | 4/14 [00:00<00:01,  9.51it/s]
Processing ETV6--NTRK3:  29%|██▊       | 4/14 [00:00<00:01,  9.51it/s]    
Processing ETV6--NTRK3:  36%|███▌      | 5/14 [00:00<00:00,  9.54it/s]
Processing CD74--ROS1:  36%|███▌      | 5/14 [00:00<00:00,  9.54it/s] 
Processing CD74--ROS1:  43%|████▎     | 6/14 [00:00<00:00,  9.56it/s]
Processing EGFR--SEPTIN14:  43%|████▎     | 6/14 [00:00<00:00,  9.56it/s]
Processing EGFR--SEPTIN14:  50%|█████     | 7/14 [00:00<00:00,  9.57it/s]
Processing TFG--NTRK1:  50%|█████     | 7/14 [00:00<00:00,  9.57it/s]    
Processing TFG--NTRK1:  57%|█████▋    | 8/14 [00:00<00:00,  9.58it/s]
Processing SLC45A3--BRAF:  57%|█████▋    | 8/14 [00:00<00:00,  9.58it/s]
Processing SLC45A3--BRAF:  64%|██████▍   | 9/14 [00:00<00:00,  9.58it/s]
Processing TPM3--NTRK1:  64%|██████▍   | 9/14 [00:00<00:00,  9.58it/s]  
Processing TPM3--NTRK1:  71%|███████▏  | 10/14 [00:01<00:00,  9.59it/s]
Processing PAX8--PPARG:  71%|███████▏  | 10/14 [00:01<00:00,  9.59it/s]
Processing PAX8--PPARG:  79%|███████▊  | 11/14 [00:01<00:00,  9.59it/s]
Processing NCOA4--RET:  79%|███████▊  | 11/14 [00:01<00:00,  9.59it/s] 
Processing NCOA4--RET:  86%|████████▌ | 12/14 [00:01<00:00,  9.59it/s]
Processing CCDC6--RET:  86%|████████▌ | 12/14 [00:01<00:00,  9.59it/s]
Processing CCDC6--RET:  93%|█████████▎| 13/14 [00:01<00:00,  9.59it/s]
Processing AC015911.9--SLFN12L:  93%|█████████▎| 13/14 [00:01<00:00,  9.59it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 14/14 [00:01<00:00,  9.59it/s]
Processing AC015911.9--SLFN12L: 100%|██████████| 14/14 [00:01<00:00,  9.55it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory