.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/4a604c7f77c6deffa1a4830db62fd2/.command.err
Size: 479 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42)
Attempt

Content

Processing Kallisto file: rna_s1221_S42/abundance.h5
Successfully converted rna_s1221_S42/abundance.h5 to rna_s1221_S42_kallisto_mqc.tsv
  Sample: rna_s1221_S42
  Mean Fragment Length: 176.5 bp
  Median Fragment Length: 162.0 bp
  pct_mito_est_counts: 0.005%
  pct_ribo_est_counts: 4.719%
  pct_hk_est_counts: 2.835%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.009%
  pct_ribo_tpm: 11.335%
  pct_hk_tpm: 3.205%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.823%