File Info
- Filename
- rna_s1221_S42.sample_scores.tsv
- Full Path
- s3://natera-platform-sandbox/users/smarinkovic/rnapipeline_vcf_bgzip_final_test/tx2gene_qc/rna_s1221_S42.sample_scores.tsv
- Size
- 2.1 KB
- Workflow Run
- rnapipeline_vcf_bgzip_final_test
- Published
- Jun 03, 2026 6:01 AM
Content
View in new tab| sample_id | category | signature | score_log2tpm1_mean | n_present | n_in_signature_targeted |
| rna_s1221_S42 | cancer | Angiogenesis_VEGF | 1.926 | 9 | 9 |
| rna_s1221_S42 | cancer | BMP_signaling | 2.569 | 13 | 13 |
| rna_s1221_S42 | cancer | Cell_cycle | 5.123 | 15 | 15 |
| rna_s1221_S42 | cancer | Hedgehog_signaling | 1.553 | 10 | 10 |
| rna_s1221_S42 | cancer | Hippo_signaling | 3.216 | 13 | 13 |
| rna_s1221_S42 | cancer | Homologous_recombination_repair | 5.274 | 33 | 33 |
| rna_s1221_S42 | cancer | Hormone_receptor_signaling | 2.148 | 8 | 8 |
| rna_s1221_S42 | cancer | JAK_STAT | 6.566 | 11 | 11 |
| rna_s1221_S42 | cancer | MSI_MMR | 5.608 | 23 | 23 |
| rna_s1221_S42 | cancer | MYC_signaling | 3.778 | 5 | 5 |
| rna_s1221_S42 | cancer | Metastasis_EMT | 2.912 | 39 | 39 |
| rna_s1221_S42 | cancer | NFkB_signaling | 6.04 | 10 | 10 |
| rna_s1221_S42 | cancer | NOTCH_signaling | 3.467 | 27 | 27 |
| rna_s1221_S42 | cancer | PI3K_AKT_mTOR | 5.244 | 18 | 18 |
| rna_s1221_S42 | cancer | RTK_MAPK_signaling | 3.538 | 32 | 32 |
| rna_s1221_S42 | cancer | TGFb_signaling | 3.699 | 13 | 13 |
| rna_s1221_S42 | cancer | WNT_signaling | 2.396 | 38 | 38 |
| rna_s1221_S42 | cancer | p53_pathway | 7.244 | 7 | 7 |
| rna_s1221_S42 | housekeeping | Housekeeping_core_minimal | 8.353 | 10 | 10 |
| rna_s1221_S42 | housekeeping | Housekeeping_normalization | 9.101 | 20 | 20 |
| rna_s1221_S42 | sex_chromosome | chry_signature | 6.823 | 5 | 5 |
| rna_s1221_S42 | tissue_origin | Bladder | 1.394 | 12 | 12 |
| rna_s1221_S42 | tissue_origin | Brain_Glioma | 0.771 | 9 | 9 |
| rna_s1221_S42 | tissue_origin | Breast | 1.43 | 13 | 13 |
| rna_s1221_S42 | tissue_origin | Breast_Basal_like_TNBC | 2.625 | 8 | 8 |
| rna_s1221_S42 | tissue_origin | Breast_HER2_enriched | 2.277 | 9 | 9 |
| rna_s1221_S42 | tissue_origin | Breast_Luminal_A | 2.041 | 10 | 10 |
| rna_s1221_S42 | tissue_origin | Breast_Luminal_B | 3.597 | 11 | 11 |
| rna_s1221_S42 | tissue_origin | Colorectal | 0.361 | 13 | 13 |
| rna_s1221_S42 | tissue_origin | Endometrial | 1.207 | 9 | 9 |
| rna_s1221_S42 | tissue_origin | Kidney_ClearCell | 2.651 | 8 | 8 |
| rna_s1221_S42 | tissue_origin | Liver | 0.298 | 10 | 10 |
| rna_s1221_S42 | tissue_origin | Lung_Adenocarcinoma | 0.957 | 9 | 9 |
| rna_s1221_S42 | tissue_origin | Lung_Squamous | 0.684 | 7 | 7 |
| rna_s1221_S42 | tissue_origin | Melanoma | 0.918 | 7 | 7 |
| rna_s1221_S42 | tissue_origin | Neuroendocrine | 1.197 | 8 | 8 |
| rna_s1221_S42 | tissue_origin | Ovary | 1.284 | 8 | 8 |
| rna_s1221_S42 | tissue_origin | Pancreas | 1.349 | 10 | 10 |
| rna_s1221_S42 | tissue_origin | Prostate | 0.276 | 7 | 7 |
| rna_s1221_S42 | tissue_origin | Upper_Urinary_Tract | 1.054 | 11 | 11 |
41 rows