File Info

Filename
multiqc_general_stats.tsv
Full Path
s3://natera-platform-sandbox/users/smarinkovic/rnapipeline_vcf_bgzip_final_test/QC/multiqc/multiqc_data/multiqc_general_stats.tsv
Size
2.1 KB
Workflow Run
rnapipeline_vcf_bgzip_final_test
Published
Jun 03, 2026 6:26 AM

Content

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sample_id AFTER_FILTERING_Q30_RATE CONTAMINATION_PCT FRAC_ANTISENSE FRAC_UNMAPPED FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN IS_CONTAMINATED N_Q30 PERCENT_DUPLICATION PCT_MITO_EST_COUNTS MITOCHONDRIAL_CONTAMINATION PCT_MRNA_BASES PCT_RIBOSOMAL_BASES SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE UNIQUE_READS_RSEQC UNIQUELY_MAPPED_PERCENT GC_BIAS PCT_ADAPTER PCT_DUPLICATION PCT_HK_EST_COUNTS PCT_HK_TPM PCT_MALE_EST_COUNTS PCT_MALE_TPM PCT_RIBO_EST_COUNTS RIBOSOMAL_CONTAMINATION PCT_SURVIVING PERCENT_GC READS MAPPED_READS AVG_SEQUENCE_LENGTH PERCENT_DUPLICATES PERCENT_FAILS TOTAL_SEQUENCES FRAC_BASES_GT30X FRAC_READS_OFF_TARGET FRAC_READS_ON_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT100X FRAC_PAIRS_OFF_TARGET FRAC_PAIRS_ON_TARGET PAIRS_OFF_TARGET PAIRS_ON_TARGET READS_OFF_TARGET READS_ON_TARGET EXPECTED_DISTINCT FRAC_DUPES UNIQUE_READS TOTAL_READS AFTER_FILTERING_GC_CONTENT AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS FRAGMENT_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_ALIGNED PROPER_PAIRS_PERCENT PSEUDOALIGNED_READS SUMMED_MEAN SUMMED_MEDIAN
rna_s1221_S42 0.983935 N/A 0.9574 0.004184 175.9 161.0 Skipped 0.985019 0.199531 0.005 0.009 95.2466 0.0867 6.823 18860516.0 94.34 0.0 36.821505 13.8514 2.835 3.206 0.0 0.0 4.719 11.334 99.28008 19856016.0 9366546.0 0.28179 0.058448 0.936331 32.871356 5.0 0.079357 0.037937 0.962063 299519.0 7595561.0 929947.0 14897693.0 52972406.0 0.198696 15910708.0 9999000000.0 0.533217 2704701920.0 19856016.0 80.30164978008439 661.036433 255
rna_s1221_S42_1 52.0 150.0 58.07204865866036 27.27272727272727 10000000.0 175.9 150 96.38390702344317 9569002.0
rna_s1221_S42_2 53.0 150.0 52.30277809172467 18.181818181818183 10000000.0 150
rna_s1221_S42_trimmed_1 53.0 138.4183874549658 58.20935855150871 18.181818181818183 9928008.0 150
rna_s1221_S42_trimmed_2 53.0 138.4393835097635 52.476350059504426 9.090909090909092 9928008.0 150
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