#!/bin/bash -euo pipefail
mkdir -p input_sheets

# Copy samplesheet to input_sheets/ (same filename) — only this file is staged
cp "cgp_rna_exp0022_v4_v2_sample_type.csv" "input_sheets/"

# Copy metadata to input_sheets/metadata.csv if provided (when metadata is a different file from samplesheet)
cp 'metadata_staged' input_sheets/metadata.csv

cat <<-END_VERSIONS > versions.yml
"COPY_INPUT_TO_OUTDIR":
    python: $(python3 --version | sed 's/Python //g')
END_VERSIONS