Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2edde258b001c62d921eb3eadc0dbb/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/3c15023005fc6ecaab130723455b3f/rna_s1221_S42.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/2edde258b001c62d921eb3eadc0dbb/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
paired = 9866026
unpaired = 119440
MERGED PAIRED END READS = 9866026
MATES PROCESSED = 19851492
TOTAL READS = 9985466
DISTINCT READS = 7.85499e+06
DISTINCT COUNTS = 178
MAX COUNT = 10576
COUNTS OF 1 = 6.49736e+06
MAX TERMS = 94
OBSERVED COUNTS (10577)
1 6497365
2 1028056
3 205036
4 58432
5 23564
6 12490
7 7629
8 5044
9 3550
10 2563
11 1921
12 1398
13 1149
14 909
15 667
16 633
17 506
18 451
19 348
20 316
21 280
22 258
23 208
24 182
25 171
26 156
27 118
28 115
29 85
30 103
31 96
32 64
33 75
34 65
35 57
36 53
37 51
38 37
39 50
40 27
41 36
42 29
43 39
44 25
45 24
46 19
47 24
48 31
49 29
50 8
51 13
52 11
53 15
54 17
55 16
56 16
57 9
58 13
59 8
60 13
61 13
62 8
63 14
64 7
65 7
66 8
67 10
68 10
69 6
70 4
71 12
72 2
73 5
74 7
75 5
76 6
77 5
78 7
79 4
80 1
81 6
82 5
83 6
84 4
85 2
86 3
87 5
88 8
89 2
90 1
91 4
92 3
93 1
94 1
96 5
97 2
98 4
99 2
100 1
101 3
102 5
104 1
105 5
107 3
108 3
109 2
110 2
111 2
112 1
113 2
115 1
116 1
117 3
118 2
119 2
121 2
122 1
123 1
124 1
125 1
129 1
131 3
132 2
133 1
134 2
135 1
136 1
138 1
139 1
140 1
143 1
146 1
147 1
148 1
150 1
153 1
155 2
157 1
158 1
159 1
161 1
162 1
164 1
167 1
169 1
175 2
179 1
183 1
184 1
186 1
190 1
191 1
200 1
202 1
203 1
205 1
207 1
209 2
214 1
215 1
218 1
221 1
229 1
233 1
236 1
241 2
243 1
246 1
247 1
249 1
277 1
308 1
315 1
346 1
366 1
400 1
459 1
10576 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]