succeeded COPY_INPUT_TO_OUTDIR (copy_input) 5s 4s - - 3.2 MB 111% 81.3 KB 1.1 KB 0 bytes 16.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (rna_s1221_S42) 7s 5s 0s 1s 15.1 MB 2112% 38.7 MB 130.6 KB 0 bytes 148.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1221_S42) 1m 37s 22s 50s 25s 4.8 GB 101% 5.2 GB 65.1 MB 0 bytes 65.1 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CANCER_INTRONS_TO_VCF (rna_s1221_S42) 6s 5s - - 15.1 MB 103% 1.1 MB 5.8 KB 0 bytes 16.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS (rna_s1221_S42) 3s 1s 0s 1s 0 bytes 91% 76.3 KB 953 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS (rna_s1221_S42) 1m 36s 11s 9s 1m 15s 558.9 MB 310% 223.9 MB 19.4 MB 173.5 MB 19.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT (rna_s1221_S42) 13s 2s 6s 5s 22.9 MB 166% 926.4 MB 2.3 MB 0 bytes 2.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:STAR_ALIGNMENT (rna_s1221_S42) 4m 18s 2s 3m 1s 1m 15s 35.5 GB 943% 45.8 GB 9.8 GB 9.4 GB 9.6 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1221_S42) 1m 7s 7s 54s 6s 655.3 MB 199% 1.2 GB 4.0 MB 0 bytes 4.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (rna_s1221_S42) 15s 11s 2s 2s 104.1 MB 100% 21.4 MB 3.2 MB 0 bytes 3.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION (rna_s1221_S42) 2m 19s 21s 1m 51s 7s 2.2 GB 110% 1.5 GB 11.2 MB 0 bytes 11.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR (rna_s1221_S42) 10m 55s 1m 1s 8m 20s 1m 33s 35.9 GB 220% 40.2 GB 3.6 GB 1.6 GB 99.4 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (rna_s1221_S42) 6s 4s 0s 1s 15.2 MB 929% 34.0 MB 46.8 KB 0 bytes 48.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (rna_s1221_S42) 15s 9s 2s 3s 126.5 MB 549% 70.9 MB 25.1 MB 0 bytes 25.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:GTF2BED (ref_annot.gtf) 26s 3s 16s 7s 3.2 GB 101% 1.3 GB 27.7 MB 0 bytes 27.7 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_INDEX (Homo_sapiens.GRCh38.102.cdna.all.fa.gz) 2m 39s 2s 2m 32s 5s 2.8 GB 177% 1.7 GB 605.9 MB 0 bytes 605.9 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1221_S42) 1m 40s 1s 1m 32s 7s 1.4 GB 296% 1.5 GB 19.3 MB 1.4 GB 19.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1221_S42) 2s 1s 0s 0s 19.2 MB 4156% 4.7 MB 3.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_TX2GENE_QC (rna_s1221_S42) 8s 5s 2s 1s 224.5 MB 1254% 44.3 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:MULTIQC 19s 12s 2s 4s 75.1 MB 982% 71.6 MB 22.9 MB 0 bytes 23.1 MB 1
45 items found |