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Resume
To resume this run, resubmit with same or fixed code. You can also change other parameters but that will affect caching behavior.
-resume rsrivas-daq-A23KYMYLT4-20260306-232142
Error Report
Error executing process > 'DAQ:SAMPLESHEET_CHECK_WF:SAMPLESHEET_CHECK (A23KYMYLT4)'
Caused by:
Process `DAQ:SAMPLESHEET_CHECK_WF:SAMPLESHEET_CHECK (A23KYMYLT4)` terminated with an error exit status (1)
Command executed:
# Create directory structure expected by sample_sheet_qc.py
mkdir -p demux_output/Reports
cp Adapter_Cycle_Metrics.csv Adapter_Metrics.csv Demultiplex_Detailed_Stats.csv Demultiplex_Stats.csv Demultiplex_Tile_Stats.csv IndexMetricsOut.bin Index_Hopping_Counts.csv Quality_Metrics.csv Quality_Tile_Metrics.csv RunInfo.xml SampleSheet.csv Top_Unknown_Barcodes.csv fastq_list.csv demux_output/Reports/
sample_sheet_qc.py \
demux_output \
--fail-threshold 10.0 --warning-threshold 5.0 \
--output-dir . \
--create-pass-file
cat <<-END_VERSIONS > versions.yml
"DAQ:SAMPLESHEET_CHECK_WF:SAMPLESHEET_CHECK":
sample_sheet_qc: 1.0.0
END_VERSIONS
Command exit status:
1
Command output:
Analyzing demux output from: demux_output
Loading Demultiplex_Stats.csv from: demux_output/Reports/Demultiplex_Stats.csv
Loaded 0 rows from Demultiplex_Stats.csv
================================================================================
ERROR: QC Analysis failed
================================================================================
Error details: Cannot set a DataFrame with multiple columns to the single column Fraction
Command error:
Traceback (most recent call last):
File "/opt/conda/bin/sample_sheet_qc.py", line 544, in main
results = analyze_bcl_convert_outputs(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/bin/sample_sheet_qc.py", line 93, in analyze_bcl_convert_outputs
demux_df['Fraction'] = demux_df.apply(
~~~~~~~~^^^^^^^^^^^^
File "/opt/conda/lib/python3.12/site-packages/pandas/core/frame.py", line 4081, in __setitem__
self._set_item_frame_value(key, value)
File "/opt/conda/lib/python3.12/site-packages/pandas/core/frame.py", line 4239, in _set_item_frame_value
raise ValueError(
ValueError: Cannot set a DataFrame with multiple columns to the single column Fraction
Work dir:
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/0fdd6cf6e8d14b42aaf87c7bf6a1dc
Container:
292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/samplesheet_check:1.0.0
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
Workflow
- Language / Cluster
- Nextflow / pltf-dev
- Session ID
- 85b06d5b-fc6f-42e3-9459-3468638ba800
- Work Dir
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work
- Output Dir
- Deleted by @rsrivas on 2026-06-02 1:05 PM. List of old outputs
- Submitted By
- rsrivas (project:altera, pipeline:daq)
- Resumed
- No
Cost and Runtime
- Status
- failed
- Cost
- $0.11
- Outputs
- Deleted
- Started
- Mar 06, 2026 3:34 PM
- Completed
- Mar 06, 2026 3:38 PM
- Duration
- 3m 29s
- Post-workflow Transfer
- 13s
- Exit Status
- 1
- Peak Tasks / CPU / Mem
- 1 / 8 / 64.0 GB