succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 5m 32s 39s 4m 39s 14s 386.9 MB 102% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) 5m 32s 16s 5m 3s 13s 444.2 MB 100% 3.0 GB 79.7 MB 0 bytes 79.5 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 36s 32s 1s 3s 10.9 MB 91% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 24s 12s 5s 7s 11.0 MB 94% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 40s 38s - - 11.1 MB 102% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 25s 13s 5s 7s 11.0 MB 80% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 19s 13s - - 5.4 MB 93% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 38s 35s - - 6.1 MB 101% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 13s 11s - - 5.9 MB 110% 2.0 MB 535.5 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 13s 11s - - 5.9 MB 95% 2.0 MB 595.2 KB 0 bytes 604.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 13s 11s - - 6.1 MB 65% 345.3 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 28s 26s - - 6.0 MB 112% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 42s 13s 26s 3s 255.7 MB 123% 117.1 MB 1.4 MB 276.0 KB 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 2m 38s 44s 1m 36s 18s 274.7 MB 126% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 0s 57s 0s 2s 0 bytes 67% 68.6 KB 961 bytes 0 bytes 4.0 KB 8
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 5s 3s 0s 1s 18.2 MB 95% 2.5 MB 835 bytes 0 bytes 12.0 KB 5
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_BGFD-N1-BDNA-1) 1m 42s 2s 1m 9s 31s 15.5 MB 139% 12.7 GB 2.8 MB 12.7 GB 2.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_BGFD-T1-TDNA-1) 8m 20s 3s 5m 51s 2m 26s 37.3 MB 140% 66.0 GB 3.2 MB 66.0 GB 3.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (1029_BGFD-N1-BDNA-1) 13m 58s 38s 12m 9s 1m 11s 24.4 MB 123% 14.2 GB 12.7 GB 13.9 GB 12.7 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (1029_BGFD-T1-TDNA-1) 1h 6m 38s 1h 1m 4m 34s 24.3 MB 124% 76.9 GB 66.0 GB 76.9 GB 66.1 GB 1
144 items found |
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