NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1) - sarek-1029_BGFD-8 - Workflow Tracker

Runs
sarek-1029_BGFD-8
Tasks
GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1)

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Task Info

Status: succeeded
Hash: 05849ed219cb
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR
Tag: 1029_BGFD-T1-TDNA-1
Attempts: 8

Attempt 8

Execution

Status: succeeded - cached
Hash: 12/65be04
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/65be04803f75526ffe45b6d12cdbad
Native ID: nf-1265be04803f75526ffe45b6d12cdbad-231cf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 1.0 GB / 12.0 GB
Process I/O (rchar / wchar): 14.0 GB / 1.5 MB
Disk I/O (read / write): 16.3 GB / 1.5 MB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:39:37 PM
Completed: Jan 24, 2026 5:09:54 PM
Total Duration: 30m 16s

Phases

Queue: 2s
Execution: 27m 18s
Stage/Unstage: 2m 56s

Attempt 7

Execution

Status: aborted
Hash: 52/697b65
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/697b6528d905d8b636c09ec17cba6e
Native ID: nf-52697b6528d905d8b636c09ec17cba6e-8eb09

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:26:43 PM
Completed: Jan 24, 2026 4:31:14 PM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -

Attempt 6

Execution

Status: failed
Hash: 7f/04208c
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/04208c3b3103d19772d4a69f9db4a2
Native ID: nf-7f04208c3b3103d19772d4a69f9db4a2-b412d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:22:50 PM
Completed: Jan 24, 2026 4:26:41 PM
Total Duration: 3m 50s

Phases

Queue: 2s
Execution: 3m 48s
Stage/Unstage: 0s

Attempt 5

Execution

Status: succeeded
Hash: 55/7b69aa
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/7b69aa5ccacd5ad0bc63eae9d0ab62
Native ID: nf-557b69aa5ccacd5ad0bc63eae9d0ab62-1fa79

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 2.0 GB / 24.0 GB
Process I/O (rchar / wchar): 14.0 GB / 1.5 MB
Disk I/O (read / write): 1.6 GB / 1.5 MB
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:04:57 PM
Completed: Jan 24, 2026 2:35:44 PM
Total Duration: 30m 46s

Phases

Queue: 3s
Execution: 27m 42s
Stage/Unstage: 3m 1s

Attempt 4

Execution

Status: failed
Hash: 49/1af014
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/1af0145917186afa4bbe95d9429de1
Native ID: nf-491af0145917186afa4bbe95d9429de1-07dc5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:01:04 PM
Completed: Jan 24, 2026 2:04:49 PM
Total Duration: 3m 44s

Phases

Queue: 2s
Execution: 3m 42s
Stage/Unstage: 0s

Attempt 3

Execution

Status: aborted
Hash: 47/6970cf
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/6970cf7d5f15c5b25044e3b9b241ca
Native ID: nf-476970cf7d5f15c5b25044e3b9b241ca-227e2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 1:58:11 PM
Completed: Jan 24, 2026 1:58:32 PM
Total Duration: -

Phases

Queue: 13s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: aborted
Hash: bb/5c23de
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/5c23de2781f51762d846777e2e1b4a
Native ID: nf-bb5c23de2781f51762d846777e2e1b4a-85b3c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 1.3 GB / 24.0 GB
Process I/O (rchar / wchar): 14.0 GB / 1.5 MB
Disk I/O (read / write): 1.4 GB / 1.5 MB
Host: i-0d1a4ac63b6960a7d ( on-demand)

Runtime

Submitted: Jan 24, 2026 3:11:38 AM
Completed: Jan 24, 2026 4:29:32 AM
Total Duration: 1h 17m

Phases

Queue: 49s
Execution: 1h 12m
Stage/Unstage: 4m 5s

Attempt 1

Execution

Status: failed
Hash: 90/e77ca7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/e77ca7c2398f1e3d997e645716b8c4
Native ID: nf-90e77ca7c2398f1e3d997e645716b8c4-231d1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0e2223b5110f88da3 ( on-demand)

Runtime

Submitted: Jan 24, 2026 3:07:12 AM
Completed: Jan 24, 2026 3:11:38 AM
Total Duration: 4m 25s

Phases

Queue: 4m 25s
Execution: -
Stage/Unstage: -