NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) - sarek-1029_BGFD-8 - Workflow Tracker

Runs
sarek-1029_BGFD-8
Tasks
GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1)

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Task Info

Status: succeeded
Hash: 1a7183162a95
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: 1029_BGFD-T1-TDNA-1
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 09/0b8740
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/0b874037466c821b66d7165d595d1b
Native ID: nf-090b874037466c821b66d7165d595d1b-a1d25

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 6
Memory (peak / alloc): 572.7 MB / 36.0 GB
Process I/O (rchar / wchar): 1.3 GB / 2.1 GB
Disk I/O (read / write): 8.1 MB / 2.1 GB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:11:20 PM
Completed: Jan 24, 2026 5:20:30 PM
Total Duration: 9m 9s

Phases

Queue: 2s
Execution: 3m 53s
Stage/Unstage: 5m 14s

Attempt 4

Execution

Status: succeeded
Hash: 17/4e27f9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/4e27f9355f1a71dece2eae054823aa
Native ID: nf-174e27f9355f1a71dece2eae054823aa-7f116

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.7 / 12
Memory (peak / alloc): 1.0 GB / 72.0 GB
Process I/O (rchar / wchar): 1.3 GB / 2.1 GB
Disk I/O (read / write): - / 2.1 GB
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:40:07 PM
Completed: Jan 24, 2026 2:48:47 PM
Total Duration: 8m 39s

Phases

Queue: 3s
Execution: 3m 49s
Stage/Unstage: 4m 47s

Attempt 3

Execution

Status: failed
Hash: 4c/3fff48
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/3fff48f0852a50f251822fa31ccd48
Native ID: nf-4c3fff48f0852a50f251822fa31ccd48-e643c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:36:38 PM
Completed: Jan 24, 2026 2:39:58 PM
Total Duration: 3m 19s

Phases

Queue: 2s
Execution: 3m 17s
Stage/Unstage: 0s

Attempt 2

Execution

Status: aborted
Hash: 93/08c1ec
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/08c1ec517e1a3e22c280528a0b6a42
Native ID: nf-9308c1ec517e1a3e22c280528a0b6a42-432ea

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 12
Memory (peak / alloc): 749.6 MB / 72.0 GB
Process I/O (rchar / wchar): 1.3 GB / 2.1 GB
Disk I/O (read / write): 7.1 MB / 2.1 GB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:40:08 AM
Completed: Jan 24, 2026 4:56:35 AM
Total Duration: 16m 26s

Phases

Queue: 10s
Execution: 10m 42s
Stage/Unstage: 5m 34s

Attempt 1

Execution

Status: failed
Hash: ac/b7766a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b7766af46cb4d73d56c7aa6460886e
Native ID: nf-acb7766af46cb4d73d56c7aa6460886e-20d7a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:36:28 AM
Completed: Jan 24, 2026 4:40:08 AM
Total Duration: 3m 39s

Phases

Queue: 3m 39s
Execution: -
Stage/Unstage: -