NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) - sarek-1029_BGFD-8 - Workflow Tracker

Runs
sarek-1029_BGFD-8
Tasks
GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1)

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Task Info

Status: succeeded
Hash: 619dec707f24
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: 1029_BGFD-T1-TDNA-1
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 75/b45d46
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/b45d467adb91931bee6ef2e9e588ae
Native ID: nf-75b45d467adb91931bee6ef2e9e588ae-66f51

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 6
Memory (peak / alloc): 649.7 MB / 36.0 GB
Process I/O (rchar / wchar): 13.2 GB / 24.5 GB
Disk I/O (read / write): 16.9 GB / 24.5 GB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:11:20 PM
Completed: Jan 24, 2026 6:02:25 PM
Total Duration: 51m 4s

Phases

Queue: 2s
Execution: 45m 50s
Stage/Unstage: 5m 12s

Attempt 4

Execution

Status: succeeded
Hash: 31/f1671f
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/f1671fd6bdc5a4fc5907337f60eaaa
Native ID: nf-31f1671fd6bdc5a4fc5907337f60eaaa-e6acd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 12
Memory (peak / alloc): 1.0 GB / 72.0 GB
Process I/O (rchar / wchar): 13.2 GB / 24.5 GB
Disk I/O (read / write): 2.8 MB / 24.5 GB
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:40:17 PM
Completed: Jan 24, 2026 3:22:15 PM
Total Duration: 41m 57s

Phases

Queue: 3s
Execution: 37m 18s
Stage/Unstage: 4m 36s

Attempt 3

Execution

Status: failed
Hash: 92/55c426
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/55c4262e60d7123bdd7dd8b90e4f4b
Native ID: nf-9255c4262e60d7123bdd7dd8b90e4f4b-72fa3

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:36:37 PM
Completed: Jan 24, 2026 2:40:12 PM
Total Duration: 3m 34s

Phases

Queue: 3s
Execution: 3m 31s
Stage/Unstage: 0s

Attempt 2

Execution

Status: succeeded
Hash: 30/641175
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/6411750da264b4795854f7261523d2
Native ID: nf-306411750da264b4795854f7261523d2-2a214

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 12
Memory (peak / alloc): 944.3 MB / 72.0 GB
Process I/O (rchar / wchar): 13.2 GB / 24.5 GB
Disk I/O (read / write): 8.3 GB / 24.5 GB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:40:38 AM
Completed: Jan 24, 2026 6:52:47 AM
Total Duration: 2h 12m

Phases

Queue: 12s
Execution: 2h 6m
Stage/Unstage: 5m 13s

Attempt 1

Execution

Status: failed
Hash: 07/cf2e6e
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/cf2e6e9275f46769581fdbb81af2e5
Native ID: nf-07cf2e6e9275f46769581fdbb81af2e5-24e4f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-06665acbd1a64624a ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:36:29 AM
Completed: Jan 24, 2026 4:40:37 AM
Total Duration: 4m 7s

Phases

Queue: 8s
Execution: 3m 59s
Stage/Unstage: 0s