NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) - sarek-1029_BGFD-8 - Workflow Tracker

Runs
sarek-1029_BGFD-8
Tasks
GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1)

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Task Info

Status: succeeded
Hash: 8a44380e94ee
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: 1029_BGFD-T1-TDNA-1
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: 73/15d191
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/15d191efa794213a06034bdbf6fa53
Native ID: nf-7315d191efa794213a06034bdbf6fa53-7e163

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 6
Memory (peak / alloc): 684.2 MB / 36.0 GB
Process I/O (rchar / wchar): 12.6 GB / 24.4 GB
Disk I/O (read / write): 11.0 MB / 24.4 GB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:11:21 PM
Completed: Jan 24, 2026 5:59:22 PM
Total Duration: 48m 0s

Phases

Queue: 1s
Execution: 42m 50s
Stage/Unstage: 5m 9s

Attempt 4

Execution

Status: succeeded
Hash: 8c/804351
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/804351c8393cba02ddf74e3434fe20
Native ID: nf-8c804351c8393cba02ddf74e3434fe20-80194

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 12
Memory (peak / alloc): 1002.4 MB / 72.0 GB
Process I/O (rchar / wchar): 12.6 GB / 24.4 GB
Disk I/O (read / write): 128.0 KB / 24.4 GB
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:40:07 PM
Completed: Jan 24, 2026 3:23:04 PM
Total Duration: 42m 56s

Phases

Queue: 2s
Execution: 38m 11s
Stage/Unstage: 4m 43s

Attempt 3

Execution

Status: failed
Hash: f4/95d8ad
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/95d8ad560b33af391492f2d7289f62
Native ID: nf-f495d8ad560b33af391492f2d7289f62-344b6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:36:38 PM
Completed: Jan 24, 2026 2:39:59 PM
Total Duration: 3m 20s

Phases

Queue: 2s
Execution: 3m 18s
Stage/Unstage: 0s

Attempt 2

Execution

Status: succeeded
Hash: 68/22556e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/22556e501d51b1c1e0e57b5faae065
Native ID: nf-6822556e501d51b1c1e0e57b5faae065-1df17

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 12
Memory (peak / alloc): 811.6 MB / 72.0 GB
Process I/O (rchar / wchar): 12.6 GB / 24.4 GB
Disk I/O (read / write): 5.1 MB / 24.4 GB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:40:58 AM
Completed: Jan 24, 2026 6:56:21 AM
Total Duration: 2h 15m

Phases

Queue: 21s
Execution: 2h 9m
Stage/Unstage: 5m 9s

Attempt 1

Execution

Status: failed
Hash: ac/17869f
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/17869f379a2fd7dbc8388401f1df5c
Native ID: nf-ac17869f379a2fd7dbc8388401f1df5c-0ce8d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:36:28 AM
Completed: Jan 24, 2026 4:40:47 AM
Total Duration: 4m 18s

Phases

Queue: 10s
Execution: 4m 8s
Stage/Unstage: 0s