succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-N1-BDNA-1) 24m 16s 9s 23m 13s 54s 681.9 MB 154% 2.3 GB 4.5 GB 0 bytes 4.5 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-N1-BDNA-1) 26m 54s 10s 25m 50s 54s 654.8 MB 154% 2.5 GB 4.9 GB 0 bytes 4.9 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-N1-BDNA-1) 24m 44s 10s 23m 39s 55s 945.9 MB 154% 2.4 GB 4.5 GB 0 bytes 4.5 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-N1-BDNA-1) 3m 5s 10s 2m 1s 54s 675.0 MB 176% 308.6 MB 413.5 MB 0 bytes 413.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) 48m 0s 1s 42m 50s 5m 9s 684.2 MB 152% 12.6 GB 24.4 GB 11.0 MB 24.4 GB 5
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) 9m 9s 2s 3m 53s 5m 14s 572.7 MB 157% 1.3 GB 2.1 GB 8.1 MB 2.1 GB 5
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) 51m 4s 2s 45m 50s 5m 12s 649.7 MB 150% 13.2 GB 24.5 GB 16.9 GB 24.5 GB 5
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) 54m 50s 2s 49m 34s 5m 14s 653.5 MB 154% 13.7 GB 25.8 GB 10.9 GB 25.8 GB 5
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-N1-BDNA-1) 30m 27s 52s 27m 5s 2m 30s 664.5 MB 105% 4.3 GB 1.5 MB 48.0 MB 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-N1-BDNA-1) 27m 58s 52s 24m 41s 2m 25s 812.7 MB 105% 3.7 GB 1.5 MB 40.0 MB 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-N1-BDNA-1) 5m 36s 52s 2m 22s 2m 22s 683.8 MB 133% 553.5 MB 1.5 MB 19.3 MB 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-N1-BDNA-1) 34m 18s 29s 33m 9s 40s 1.7 GB 103% 4.2 GB 1.5 MB 3.8 GB 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1) 30m 16s 2s 27m 18s 2m 56s 1.0 GB 101% 14.0 GB 1.5 MB 16.3 GB 1.5 MB 8
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1) 1h 21m 9s 1h 19m 2m 16s 1.4 GB 101% 15.0 GB 1.5 MB 17.4 GB 1.5 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1) 31m 11s 2s 28m 14s 2m 55s 1.5 GB 102% 15.5 GB 1.5 MB 19.1 GB 1.5 MB 8
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1) 10m 29s 49s 5m 38s 4m 2s 589.8 MB 108% 1.5 GB 1.5 MB 296.9 MB 1.5 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (1029_BGFD-N1-BDNA-1) 21s 10s 8s 3s 556.8 MB 300% 101.4 MB 1.5 MB 0 bytes 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (1029_BGFD-T1-TDNA-1) 8s 3s 3s 2s 438.3 MB 334% 101.6 MB 1.5 MB 0 bytes 1.5 MB 3
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BGFD-N1-BDNA-1) 2m 17s 1m 2s 41s 33s 814.7 MB 133% 3.8 GB 54.9 MB 0 bytes 54.9 MB 1
aborted NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BGFD-T1-TDNA-1) - 1m 10s - - - - - - - - 2
144 items found |
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