succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BGFD-N1-BDNA-1) 4s 3s - - 3.3 MB 83% 161.0 KB 12.8 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1) 19s 17s 0s 1s 18.3 MB 1076% 2.0 MB 43.9 KB 0 bytes 48.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1) 5s 4s 0s 0s 28.5 MB 6339% 195.7 KB 721 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1) 5s 3s 0s 1s 32.3 MB 5191% 156.7 KB 1.9 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1) 8s 7s 0s 0s 34.9 MB 6127% 1.3 MB 39.0 KB 0 bytes 44.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1) 5s 3s 1s 0s 27.3 MB 3252% 32.3 MB 223.2 KB 0 bytes 232.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1) 5s 3s 0s 1s 14.4 MB 3642% 31.2 MB 377.4 KB 0 bytes 388.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1) 13s 9s 2s 1s 101.8 MB 1671% 38.5 MB 4.9 MB 0 bytes 4.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1) 1m 57s 3s 1m 22s 32s 480.0 MB 100% 18.6 GB 11.7 MB 15.9 GB 11.8 MB 1
aborted NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1) - 19s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1) 1m 53s 3s 1m 20s 30s 478.6 MB 100% 17.8 GB 5.3 MB 15.1 GB 5.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1) 1m 49s 3s 1m 16s 30s 7.9 MB 100% 15.8 GB 162.1 KB 12.6 GB 168.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1) 4s 2s - - 3.3 MB 86% 153.9 KB 12.7 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1) 3s 2s 1s 0s 9.6 MB 114% 948.6 KB 144.9 KB 0 bytes 148.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1) 3s 2s - - 3.2 MB 91% 123.5 KB 7.3 KB 0 bytes 12.0 KB 1
aborted NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BGFD-T1-TDNA-1_vs_1029_BGFD-N1-BDNA-1) - 1m 39s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_ASCAT:ASCAT (1029_BGFD-T1-TDNA-1_vs_1029_BGFD-N1-BDNA-1) 9m 57s 2m 1s 4m 58s 2m 58s 3.6 GB 447% 78.8 GB 116.9 MB 58.2 GB 117.1 MB 1
aborted NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CNV_FACETS (1029_BGFD-T1-TDNA-1_vs_1029_BGFD-N1-BDNA-1) - 3m 18s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA:MANTA_SOMATIC (1029_BGFD-T1-TDNA-1_vs_1029_BGFD-N1-BDNA-1) - 1m 28s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_NORMAL (1029_BGFD-N1-BDNA-1) 34s 25s 5s 4s 309.8 MB 288% 103.6 MB 2.3 MB 0 bytes 2.3 MB 1
144 items found |
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