succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BGFD-N1-BDNA-1) 28m 10s 32s 27m 34s 3s 7.6 GB 112% 600.3 MB 49.4 MB 0 bytes 49.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (1029_BGFD-N1-BDNA-1) 5s 3s 0s 1s 14.7 MB 91% 1011.5 KB 2.0 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1) 3m 8s 43s 1m 45s 40s 577.5 MB 132% 18.6 GB 11.6 MB 0 bytes 1.0 MB 1
aborted NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BGFD-T1-TDNA-1) - 10s - - - - - - - - 2
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (1029_BGFD-N1-BDNA-1) 3m 15s 37s 1m 47s 51s 2.1 GB 235% 12.7 GB 340.5 MB 12.7 GB 340.8 MB 1
aborted NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (1029_BGFD-T1-TDNA-1) - 10s - - - - - - - - 2
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_BGFD-N1-BDNA-1) 6m 0s 2s 5m 18s 40s 9.4 MB 131% 12.7 GB 169.9 KB 12.7 GB 172.0 KB 1
aborted NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_BGFD-T1-TDNA-1) - 10s - - - - - - - - 2
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (1029_BGFD-N1-BDNA-1) 9m 33s 2s 8m 12s 1m 19s 748.7 MB 207% 27.1 GB 8.4 GB 26.9 GB 8.4 GB 1
aborted NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (1029_BGFD-T1-TDNA-1) - 1m 49s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:MULTIQC 10s 3s 4s 2s 614.3 MB 681% 80.0 MB 25.9 MB 0 bytes 24.9 MB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BGFD-N1-BDNA-1) 4s 2s - - 3.3 MB 7661% 257.0 KB 71.9 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BGFD-N1-BDNA-1) 5s 3s - - 3.3 MB 8460% 191.8 KB 32.2 KB 0 bytes 44.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (1029_BGFD-N1-BDNA-1) 4s 2s - - 20.1 MB 7705% 1.9 MB 1.1 MB 0 bytes 1.1 MB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (1029_BGFD-N1-BDNA-1) 4s 2s - - 3.1 MB 7907% 299.7 KB 72.2 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (1029_BGFD-N1-BDNA-1) 5s 3s - - 16.8 MB 5675% 2.0 MB 1.1 MB 0 bytes 1.1 MB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_LOWDEPTH:BCFTOOLS_ANNOTATE (1029_BGFD-N1-BDNA-1) 4s 2s - - 3.1 MB 8917% 234.1 KB 32.4 KB 0 bytes 44.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (1029_BGFD-N1-BDNA-1) 1m 7s 14s 39s 14s 2.2 GB 533% 5.0 GB 97.5 MB 0 bytes 7.5 MB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (1029_BGFD-N1-BDNA-1) 33s 14s 5s 14s 186.9 MB 100% 149.5 MB 1.2 MB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (1029_BGFD-N1-BDNA-1) 37s 11s 16s 10s 410.7 MB 106% 587.4 MB 6.2 MB 0 bytes 348.0 KB 1
144 items found |
1 2 3 4 5 6 7 8