NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1) - sarek-1029_BGFD-8 - Workflow Tracker

Runs
sarek-1029_BGFD-8
Tasks
GATK4_BASERECALIBRATOR (1029_BGFD-T1-TDNA-1)

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Task Info

Status: succeeded
Hash: a95dd4a6c428
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR
Tag: 1029_BGFD-T1-TDNA-1
Attempts: 8

Attempt 8

Execution

Status: succeeded - cached
Hash: 96/c640c7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/c640c74c6593675d93477067641dd1
Native ID: nf-96c640c74c6593675d93477067641dd1-a3ab9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 1.5 GB / 12.0 GB
Process I/O (rchar / wchar): 15.5 GB / 1.5 MB
Disk I/O (read / write): 19.1 GB / 1.5 MB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:39:37 PM
Completed: Jan 24, 2026 5:10:49 PM
Total Duration: 31m 11s

Phases

Queue: 2s
Execution: 28m 14s
Stage/Unstage: 2m 55s

Attempt 7

Execution

Status: aborted
Hash: f0/26c5d8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/26c5d8dc3879718f3995e83b3326db
Native ID: nf-f026c5d8dc3879718f3995e83b3326db-0bf9a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 4
Memory (peak / alloc): - / 24.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:27:33 PM
Completed: Jan 24, 2026 4:31:15 PM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -

Attempt 6

Execution

Status: failed
Hash: a7/3cdd9f
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3cdd9f0377762fe53a9721c41a6e67
Native ID: nf-a73cdd9f0377762fe53a9721c41a6e67-53f97

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:22:50 PM
Completed: Jan 24, 2026 4:27:24 PM
Total Duration: 4m 33s

Phases

Queue: 2s
Execution: 4m 31s
Stage/Unstage: 0s

Attempt 5

Execution

Status: succeeded
Hash: 1d/70fc57
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/70fc5713c0fab9c82dae136dcf867b
Native ID: nf-1d70fc5713c0fab9c82dae136dcf867b-5c5ca

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 1.7 GB / 24.0 GB
Process I/O (rchar / wchar): 15.5 GB / 1.5 MB
Disk I/O (read / write): 19.1 GB / 1.5 MB
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:05:07 PM
Completed: Jan 24, 2026 2:36:17 PM
Total Duration: 31m 9s

Phases

Queue: 3s
Execution: 28m 15s
Stage/Unstage: 2m 51s

Attempt 4

Execution

Status: failed
Hash: b6/08e88a
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/08e88ad967a3a1ea4533fb6e5fd499
Native ID: nf-b608e88ad967a3a1ea4533fb6e5fd499-34a1c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:01:04 PM
Completed: Jan 24, 2026 2:05:01 PM
Total Duration: 3m 56s

Phases

Queue: 2s
Execution: 3m 54s
Stage/Unstage: 0s

Attempt 3

Execution

Status: aborted
Hash: 3c/3de6ad
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/3de6adb4daaf4f69b36196cab6f727
Native ID: nf-3c3de6adb4daaf4f69b36196cab6f727-a93ff

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 1:58:11 PM
Completed: Jan 24, 2026 1:58:33 PM
Total Duration: -

Phases

Queue: 13s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: aborted
Hash: bb/483d7a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/483d7aea4a25d5e6220714e8ac6c62
Native ID: nf-bb483d7aea4a25d5e6220714e8ac6c62-a56a2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 1.0 GB / 24.0 GB
Process I/O (rchar / wchar): 15.5 GB / 1.5 MB
Disk I/O (read / write): 17.6 GB / 1.5 MB
Host: i-0e2223b5110f88da3 ( on-demand)

Runtime

Submitted: Jan 24, 2026 3:13:58 AM
Completed: Jan 24, 2026 4:33:14 AM
Total Duration: 1h 19m

Phases

Queue: 8s
Execution: 1h 16m
Stage/Unstage: 2m 17s

Attempt 1

Execution

Status: failed
Hash: 29/35968a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/35968ade7a5a3bd1c9369ce9cf8f48
Native ID: nf-2935968ade7a5a3bd1c9369ce9cf8f48-fa66c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-06665acbd1a64624a ( on-demand)

Runtime

Submitted: Jan 24, 2026 3:07:13 AM
Completed: Jan 24, 2026 3:13:58 AM
Total Duration: 6m 44s

Phases

Queue: 6m 44s
Execution: -
Stage/Unstage: -