NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1) - sarek-1029_BGFD-8 - Workflow Tracker

Runs
sarek-1029_BGFD-8
Tasks
GATK4_APPLYBQSR (1029_BGFD-T1-TDNA-1)

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Task Info

Status: succeeded
Hash: edcd1fa47a5d
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: 1029_BGFD-T1-TDNA-1
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: a9/0518e3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/0518e30ba874e44937396f67aea721
Native ID: nf-a90518e30ba874e44937396f67aea721-37bba

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 6
Memory (peak / alloc): 653.5 MB / 36.0 GB
Process I/O (rchar / wchar): 13.7 GB / 25.8 GB
Disk I/O (read / write): 10.9 GB / 25.8 GB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:11:20 PM
Completed: Jan 24, 2026 6:06:11 PM
Total Duration: 54m 50s

Phases

Queue: 2s
Execution: 49m 34s
Stage/Unstage: 5m 14s

Attempt 4

Execution

Status: succeeded
Hash: 15/de5e57
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/de5e574be1edb894ff1cc345815319
Native ID: nf-15de5e574be1edb894ff1cc345815319-e9e43

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 12
Memory (peak / alloc): 1.4 GB / 72.0 GB
Process I/O (rchar / wchar): 13.7 GB / 25.8 GB
Disk I/O (read / write): 4.0 KB / 25.8 GB
Host: i-08458d4f9b8ae3943 ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:40:37 PM
Completed: Jan 24, 2026 3:25:31 PM
Total Duration: 44m 53s

Phases

Queue: 2s
Execution: 40m 22s
Stage/Unstage: 4m 29s

Attempt 3

Execution

Status: failed
Hash: 24/09259b
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/09259ba0df07044dc58b32ea4e8a40
Native ID: nf-2409259ba0df07044dc58b32ea4e8a40-15e8c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:36:38 PM
Completed: Jan 24, 2026 2:40:31 PM
Total Duration: 3m 52s

Phases

Queue: 2s
Execution: 3m 50s
Stage/Unstage: 0s

Attempt 2

Execution

Status: aborted
Hash: 87/187ba6
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/187ba66a824a479f51a5fb93014521
Native ID: nf-87187ba66a824a479f51a5fb93014521-03798

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 12
Memory (peak / alloc): 1.3 GB / 72.0 GB
Process I/O (rchar / wchar): 13.7 GB / 25.8 GB
Disk I/O (read / write): 1.5 GB / 25.8 GB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:40:38 AM
Completed: Jan 24, 2026 7:01:08 AM
Total Duration: 2h 20m

Phases

Queue: 12s
Execution: 2h 15m
Stage/Unstage: 5m 12s

Attempt 1

Execution

Status: failed
Hash: 19/8a06f5
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/8a06f571b1865d4100798348df3eaa
Native ID: nf-198a06f571b1865d4100798348df3eaa-3bf18

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 4:36:29 AM
Completed: Jan 24, 2026 4:40:38 AM
Total Duration: 4m 9s

Phases

Queue: 4m 9s
Execution: -
Stage/Unstage: -