succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 3m 58s 49s 2m 55s 14s 386.9 MB 105% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) 3m 13s 50s 2m 13s 10s 443.8 MB 106% 3.0 GB 79.7 MB 0 bytes 79.5 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 51s 49s - - 11.0 MB 104% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 54s 48s 2s 4s 11.0 MB 101% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 50s 48s - - 10.9 MB 108% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 54s 47s 2s 5s 11.0 MB 100% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 52s 48s - - 5.4 MB 98% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 50s 48s - - 6.2 MB 105% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 4s 3s - - 6.2 MB 117% 2.0 MB 535.5 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 5s 4s - - 6.2 MB 109% 2.0 MB 595.2 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 6s 5s - - 3.2 MB 148% 346.2 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 4s 3s - - 6.0 MB 106% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 1m 8s 59s 8s 1s 261.5 MB 159% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 29s 5s 58s 26s 274.0 MB 113% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 50s 49s 0s 0s 0 bytes 110% 70.1 KB 795 bytes 0 bytes 4.0 KB 1
aborted NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122788758-122788929) - 17s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_69091-70008) - 18s - - - - - - - - 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr22_46626800-46626961) 2m 56s 15s 1m 28s 1m 13s 580.8 MB 120% 716.0 MB 8.7 MB 293.8 MB 8.8 MB 1
aborted NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr6_29306690-29307655) - 18s - - - - - - - - 1
aborted NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BGFD_1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr12_122788758-122788929) - 17s - - - - - - - - 1
23 items found |
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