Run's output directory was deleted on 2026-05-29 12:20 PM by @abshah.
| Path | ||
|---|---|---|
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/multiqc/multiqc_plots | Jan 26, 2026 8:02 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/multiqc/multiqc_data | Jan 26, 2026 8:01 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/multiqc/multiqc_report.html | Jan 26, 2026 8:01 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/annotation/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Jan 26, 2026 8:01 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/annotation/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz | Jan 26, 2026 8:00 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/EnsemblVEP/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.summary.html | Jan 26, 2026 8:00 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/variant_qc.json | Jan 26, 2026 8:00 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/annotation/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz | Jan 26, 2026 7:59 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/annotation/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff.ann.vcf.gz.tbi | Jan 26, 2026 7:59 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/raw_qc/snpeff/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt | Jan 26, 2026 7:59 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/raw_qc/snpeff/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff.csv | Jan 26, 2026 7:59 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/raw_qc/vcftools/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased.TsTv.count | Jan 26, 2026 7:58 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/raw_qc/vcftools/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased.FILTER.summary | Jan 26, 2026 7:58 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/raw_qc/vcftools/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased.TsTv.qual | Jan 26, 2026 7:58 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/reports/raw_qc/bcftools/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased.bcftools_stats.txt | Jan 26, 2026 7:58 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups-5/variant_calling/whatshap/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased.vcf.gz | Jan 26, 2026 7:57 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups2-1/multiqc/multiqc_plots | Jan 26, 2026 7:50 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups2-1/multiqc/multiqc_data | Jan 26, 2026 7:49 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups2-1/multiqc/multiqc_report.html | Jan 26, 2026 7:49 AM | |
| s3://natera-platform-sandbox/users/abshah/sarek/outputs/sarek-1029_BGFD-speedups2-1/annotation/mutect2/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30/1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30.mutect2.whatshap.phased_custom.ann_snpEff_VEP.ann.vcf.gz.tbi | Jan 26, 2026 7:48 AM |