NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975)

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Task Info

Status: succeeded
Hash: 2512515340b9
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975
Attempts: 5

Attempt 5

Execution

Status: succeeded
Hash: 31/5e7783
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/5e7783edf835d54c1f0880b659e5b3
Native ID: nf-315e7783edf835d54c1f0880b659e5b3-76168

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 6
Memory (peak / alloc): 5.5 GB / 36.0 GB
Process I/O (rchar / wchar): 14.7 GB / 22.7 MB
Disk I/O (read / write): 14.2 GB / 22.8 MB
Host: i-031ce6bb5e3b37abd ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:54 AM
Completed: Jan 26, 2026 5:33:59 AM
Total Duration: 59m 4s

Phases

Queue: 1m 30s
Execution: 52m 34s
Stage/Unstage: 5m 0s

Attempt 4

Execution

Status: succeeded - cached
Hash: 4d/0237a7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/0237a7c9935f89852084246c9d65ca
Native ID: nf-4d0237a7c9935f89852084246c9d65ca-56834

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 6
Memory (peak / alloc): 1.6 GB / 36.0 GB
Process I/O (rchar / wchar): 5.0 GB / 7.5 MB
Disk I/O (read / write): 1011.8 MB / 7.6 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:57 AM
Completed: Jan 26, 2026 1:12:17 AM
Total Duration: 19m 19s

Phases

Queue: 4s
Execution: 13m 58s
Stage/Unstage: 5m 17s

Attempt 3

Execution

Status: failed
Hash: 37/a5d9ba
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/a5d9ba5d8697320b44043d900d91ab
Native ID: nf-37a5d9ba5d8697320b44043d900d91ab-260a6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:36:03 PM
Completed: Jan 25, 2026 11:40:57 PM
Total Duration: 4m 53s

Phases

Queue: 4s
Execution: 4m 49s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: 96/f60060
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/f60060b1640db088aad044da7e1dfa
Native ID: nf-96f60060b1640db088aad044da7e1dfa-73f84

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:31:03 PM
Completed: Jan 25, 2026 11:35:57 PM
Total Duration: 4m 53s

Phases

Queue: 3s
Execution: 4m 50s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 47/17655f
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/17655fe31ce0a7dfbb28672446a562
Native ID: nf-4717655fe31ce0a7dfbb28672446a562-676f8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:26 PM
Completed: Jan 25, 2026 11:30:58 PM
Total Duration: 5m 31s

Phases

Queue: 2s
Execution: 5m 29s
Stage/Unstage: 0s