NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
SNPEFF_SNPEFF (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: 3602800114eb
Process: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 4

Attempt 4

Execution

Status: succeeded - cached
Hash: 06/e6ca1d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e6ca1dbcca3543fea5fcb1120b2241
Native ID: nf-06e6ca1dbcca3543fea5fcb1120b2241-699c2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.6 / 4
Memory (peak / alloc): 3.4 GB / 10.0 GB
Process I/O (rchar / wchar): 313.0 MB / 4.2 MB
Disk I/O (read / write): - / 1.4 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 3:18:04 AM
Completed: Jan 26, 2026 3:18:47 AM
Total Duration: 42s

Phases

Queue: 3s
Execution: 36s
Stage/Unstage: 3s

Attempt 3

Execution

Status: succeeded
Hash: 26/f81ba7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/f81ba729c29cf45a4f7d7c16a4623c
Native ID: nf-26f81ba729c29cf45a4f7d7c16a4623c-7af1c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 4
Memory (peak / alloc): 3.9 GB / 10.0 GB
Process I/O (rchar / wchar): 641.2 MB / 7.1 MB
Disk I/O (read / write): - / 4.4 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:28:04 AM
Completed: Jan 26, 2026 2:29:24 AM
Total Duration: 1m 19s

Phases

Queue: 12s
Execution: 1m 5s
Stage/Unstage: 2s

Attempt 2

Execution

Status: succeeded
Hash: 87/dcb18f
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/dcb18f817079677fcc9d5e7d563d75
Native ID: nf-87dcb18f817079677fcc9d5e7d563d75-b1529

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 4
Memory (peak / alloc): 3.6 GB / 10.0 GB
Process I/O (rchar / wchar): 639.9 MB / 15.2 MB
Disk I/O (read / write): - / 12.3 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:13:34 AM
Completed: Jan 26, 2026 12:14:49 AM
Total Duration: 1m 14s

Phases

Queue: 9s
Execution: 1m 2s
Stage/Unstage: 3s

Attempt 1

Execution

Status: succeeded
Hash: 88/72b1da
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/snpeff:5.1--hdfd78af_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/72b1da60d95bd30be9b381f54322ae
Native ID: nf-8872b1da60d95bd30be9b381f54322ae-6667c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 4
Memory (peak / alloc): 3.4 GB / 10.0 GB
Process I/O (rchar / wchar): 639.9 MB / 15.2 MB
Disk I/O (read / write): - / 12.4 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:47:02 PM
Completed: Jan 25, 2026 10:48:16 PM
Total Duration: 1m 13s

Phases

Queue: 8s
Execution: 1m 2s
Stage/Unstage: 3s