NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:MERGE_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MERGE_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

Login

Task Info

Status: succeeded
Hash: 3c52c865378f
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:MERGE_HAPLOTYPECALLER
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: 39/a73df8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/a73df8443a8c87e9865977ca56ff4c
Native ID: nf-39a73df8443a8c87e9865977ca56ff4c-843d8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.4 / 2
Memory (peak / alloc): 455.3 MB / 4.0 GB
Process I/O (rchar / wchar): 98.0 MB / 2.4 MB
Disk I/O (read / write): - / 2.4 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:44:49 AM
Completed: Jan 26, 2026 4:44:59 AM
Total Duration: 9s

Phases

Queue: 2s
Execution: 4s
Stage/Unstage: 3s

Attempt 2

Execution

Status: succeeded - cached
Hash: 56/2de3d4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/2de3d466b1f84294cc94c2dbca8d5f
Native ID: nf-562de3d466b1f84294cc94c2dbca8d5f-b87dd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.6 / 2
Memory (peak / alloc): 245.5 MB / 4.0 GB
Process I/O (rchar / wchar): 97.5 MB / 2.4 MB
Disk I/O (read / write): - / 2.4 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:28:34 AM
Completed: Jan 26, 2026 12:28:43 AM
Total Duration: 8s

Phases

Queue: 3s
Execution: 3s
Stage/Unstage: 2s

Attempt 1

Execution

Status: succeeded
Hash: 34/b1be4e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/b1be4e871700dcf031c79ce908d9a3
Native ID: nf-34b1be4e871700dcf031c79ce908d9a3-6fbaf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.6 / 2
Memory (peak / alloc): 222.3 MB / 4.0 GB
Process I/O (rchar / wchar): 97.5 MB / 2.4 MB
Disk I/O (read / write): - / 2.4 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:02:22 PM
Completed: Jan 25, 2026 11:02:30 PM
Total Duration: 7s

Phases

Queue: 2s
Execution: 3s
Stage/Unstage: 2s