NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr12_122813270-122813419) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr12_122813270-122813419)

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Task Info

Status: succeeded
Hash: 47c55f7478ac
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr12_122813270-122813419
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: a2/e76fad
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/e76fad93114a1596020ef96def6c69
Native ID: nf-a2e76fad93114a1596020ef96def6c69-bb3ea

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 6
Memory (peak / alloc): 605.9 MB / 36.0 GB
Process I/O (rchar / wchar): 9.4 GB / 823.4 KB
Disk I/O (read / write): 9.4 GB / 832.0 KB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:52 AM
Completed: Jan 26, 2026 4:45:29 AM
Total Duration: 10m 36s

Phases

Queue: 3s
Execution: 5m 31s
Stage/Unstage: 5m 2s

Attempt 3

Execution

Status: succeeded
Hash: 69/814ca1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/814ca15965e85c226f0c84f961a5b9
Native ID: nf-69814ca15965e85c226f0c84f961a5b9-52623

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 6
Memory (peak / alloc): 670.0 MB / 36.0 GB
Process I/O (rchar / wchar): 42.2 GB / 1.2 MB
Disk I/O (read / write): 42.2 GB / 1.2 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:19 AM
Completed: Jan 26, 2026 2:55:54 AM
Total Duration: 30m 34s

Phases

Queue: 1m 29s
Execution: 23m 55s
Stage/Unstage: 5m 10s

Attempt 2

Execution

Status: aborted
Hash: 74/339992
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/339992d7034212dd30287b46acd2bf
Native ID: nf-74339992d7034212dd30287b46acd2bf-5fcf5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:56 AM
Completed: Jan 26, 2026 1:14:27 AM
Total Duration: -

Phases

Queue: 18s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: aborted
Hash: e0/cb722a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/cb722aa0863dc5ae4816ff0ea5af34
Native ID: nf-e0cb722aa0863dc5ae4816ff0ea5af34-3a30c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:25 PM
Completed: Jan 25, 2026 11:41:05 PM
Total Duration: -

Phases

Queue: 8s
Execution: -
Stage/Unstage: -