NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr17_40792427-40792569) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr17_40792427-40792569)

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Task Info

Status: succeeded
Hash: 5170a249e975
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr17_40792427-40792569
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: c1/441b2d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/441b2de1000e29a64c00263a23e833
Native ID: nf-c1441b2de1000e29a64c00263a23e833-875ef

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 6
Memory (peak / alloc): 594.8 MB / 36.0 GB
Process I/O (rchar / wchar): 10.3 GB / 846.3 KB
Disk I/O (read / write): 182.2 MB / 856.0 KB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:51 AM
Completed: Jan 26, 2026 4:46:14 AM
Total Duration: 11m 22s

Phases

Queue: 3s
Execution: 6m 14s
Stage/Unstage: 5m 5s

Attempt 3

Execution

Status: succeeded
Hash: 6c/0d4c11
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/0d4c114c4196115741d4eee42c0211
Native ID: nf-6c0d4c114c4196115741d4eee42c0211-10069

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 6
Memory (peak / alloc): 606.6 MB / 36.0 GB
Process I/O (rchar / wchar): 44.3 GB / 1.3 MB
Disk I/O (read / write): 44.3 GB / 1.3 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:19 AM
Completed: Jan 26, 2026 2:57:48 AM
Total Duration: 32m 28s

Phases

Queue: 1m 29s
Execution: 25m 44s
Stage/Unstage: 5m 15s

Attempt 2

Execution

Status: aborted
Hash: bb/241d4b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/241d4bdbca5947682cbe6af328f30b
Native ID: nf-bb241d4bdbca5947682cbe6af328f30b-ca656

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:56 AM
Completed: Jan 26, 2026 1:14:27 AM
Total Duration: -

Phases

Queue: 8s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: aborted
Hash: 71/626428
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/6264284c0778aef95011fa5957a31b
Native ID: nf-716264284c0778aef95011fa5957a31b-dd8e9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:25 PM
Completed: Jan 25, 2026 11:41:05 PM
Total Duration: -

Phases

Queue: 8s
Execution: -
Stage/Unstage: -