NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122813270-122813419) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GATK4_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122813270-122813419)

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Task Info

Status: succeeded
Hash: 83c8e1d6b157
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122813270-122813419
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: e7/079ce7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/079ce73227bb41fbe952bc5c526b00
Native ID: nf-e7079ce73227bb41fbe952bc5c526b00-5e12d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.2 / 6
Memory (peak / alloc): 1.2 GB / 36.0 GB
Process I/O (rchar / wchar): 2.3 GB / 1.2 MB
Disk I/O (read / write): 460.7 MB / 1.2 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:51 AM
Completed: Jan 26, 2026 4:40:08 AM
Total Duration: 5m 16s

Phases

Queue: 3s
Execution: 4m 1s
Stage/Unstage: 1m 12s

Attempt 2

Execution

Status: succeeded - cached
Hash: f4/c838b3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/c838b3a4b6a66adc8a2ce66c938ec5
Native ID: nf-f4c838b3a4b6a66adc8a2ce66c938ec5-0b91f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 6
Memory (peak / alloc): 1.8 GB / 36.0 GB
Process I/O (rchar / wchar): 10.0 GB / 1.6 MB
Disk I/O (read / write): - / 1.6 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:47 AM
Completed: Jan 26, 2026 12:23:04 AM
Total Duration: 20m 16s

Phases

Queue: 1m 24s
Execution: 17m 40s
Stage/Unstage: 1m 12s

Attempt 1

Execution

Status: succeeded
Hash: 7e/afea16
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/afea163aa80842589443643a58cd21
Native ID: nf-7eafea163aa80842589443643a58cd21-0c68f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 6
Memory (peak / alloc): 1.4 GB / 36.0 GB
Process I/O (rchar / wchar): 10.0 GB / 1.6 MB
Disk I/O (read / write): - / 1.6 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:36:34 PM
Completed: Jan 25, 2026 10:56:11 PM
Total Duration: 19m 36s

Phases

Queue: 1m 26s
Execution: 17m 1s
Stage/Unstage: 1m 9s