NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122788758-122788929) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122788758-122788929)

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Task Info

Status: succeeded
Hash: 86c172c37713
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122788758-122788929
Attempts: 6

Attempt 6

Execution

Status: succeeded
Hash: e5/fe6256
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/fe6256b84f804a1751ec9e3cbb9682
Native ID: nf-e5fe6256b84f804a1751ec9e3cbb9682-91019

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 6
Memory (peak / alloc): 6.2 GB / 36.0 GB
Process I/O (rchar / wchar): 13.9 GB / 20.9 MB
Disk I/O (read / write): 13.1 GB / 20.9 MB
Host: i-0ae3e5fe742aad69f ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:53 AM
Completed: Jan 26, 2026 5:29:29 AM
Total Duration: 54m 35s

Phases

Queue: 1m 39s
Execution: 47m 55s
Stage/Unstage: 5m 1s

Attempt 5

Execution

Status: succeeded
Hash: f5/c6d324
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/c6d324306bf598745003a72dd82d31
Native ID: nf-f5c6d324306bf598745003a72dd82d31-7c8a1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 6
Memory (peak / alloc): 4.7 GB / 36.0 GB
Process I/O (rchar / wchar): 51.9 GB / 80.9 MB
Disk I/O (read / write): 45.7 GB / 80.9 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:19 AM
Completed: Jan 26, 2026 5:31:20 AM
Total Duration: 3h 6m

Phases

Queue: 1m 29s
Execution: 2h 59m
Stage/Unstage: 5m 16s

Attempt 4

Execution

Status: aborted
Hash: 6c/3ad877
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/3ad87793332ec803b58850da6c20c4
Native ID: nf-6c3ad87793332ec803b58850da6c20c4-c1627

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09ac7814b40862fcb ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:58 AM
Completed: Jan 26, 2026 1:14:28 AM
Total Duration: -

Phases

Queue: 1m 6s
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: aborted
Hash: 69/16e165
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/16e1655c1302501768529a505067fd
Native ID: nf-6916e1655c1302501768529a505067fd-cf766

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:36:43 PM
Completed: Jan 25, 2026 11:41:07 PM
Total Duration: -

Phases

Queue: 10s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: ee/031aef
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/031aef94d544976801c090586c1dd9
Native ID: nf-ee031aef94d544976801c090586c1dd9-c9493

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:31:42 PM
Completed: Jan 25, 2026 11:36:40 PM
Total Duration: 4m 57s

Phases

Queue: 6s
Execution: 4m 51s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: e8/0ec2b0
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/0ec2b0580d6d7ebbeb00a9e0f9a646
Native ID: nf-e80ec2b0580d6d7ebbeb00a9e0f9a646-2ebf8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:25 PM
Completed: Jan 25, 2026 11:31:35 PM
Total Duration: 6m 9s

Phases

Queue: 3s
Execution: 6m 6s
Stage/Unstage: 0s