NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: 874311954b60
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: c5/8041db
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/8041dbb915c14f7954344f86462c41
Native ID: nf-c58041dbb915c14f7954344f86462c41-cab9b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 481.0 MB / 4.0 GB
Process I/O (rchar / wchar): 30.4 GB / 11.8 MB
Disk I/O (read / write): 30.2 GB / 11.8 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:40:00 AM
Completed: Jan 26, 2026 4:43:17 AM
Total Duration: 3m 16s

Phases

Queue: 5s
Execution: 2m 14s
Stage/Unstage: 57s

Attempt 3

Execution

Status: succeeded - cached
Hash: 72/04e1be
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/04e1be8545a3efd10d873fe77701fe
Native ID: nf-7204e1be8545a3efd10d873fe77701fe-7e918

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 481.0 MB / 4.0 GB
Process I/O (rchar / wchar): 30.4 GB / 11.8 MB
Disk I/O (read / write): 30.2 GB / 11.8 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:09:14 AM
Completed: Jan 26, 2026 12:12:30 AM
Total Duration: 3m 15s

Phases

Queue: 5s
Execution: 2m 13s
Stage/Unstage: 57s

Attempt 2

Execution

Status: succeeded
Hash: 72/e9237a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/e9237a1c132ee2ba5d88c62e9860de
Native ID: nf-72e9237a1c132ee2ba5d88c62e9860de-4b096

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 479.6 MB / 4.0 GB
Process I/O (rchar / wchar): 29.8 GB / 7.3 MB
Disk I/O (read / write): 29.6 GB / 7.3 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:11:34 AM
Completed: Jan 26, 2026 12:14:45 AM
Total Duration: 3m 10s

Phases

Queue: 3s
Execution: 2m 11s
Stage/Unstage: 56s

Attempt 1

Execution

Status: succeeded
Hash: cc/b70045
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/b7004513097aef4d03cceac48d62d7
Native ID: nf-ccb7004513097aef4d03cceac48d62d7-08b23

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 479.6 MB / 4.0 GB
Process I/O (rchar / wchar): 29.8 GB / 7.3 MB
Disk I/O (read / write): 29.6 GB / 7.3 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:45:12 PM
Completed: Jan 25, 2026 10:48:26 PM
Total Duration: 3m 13s

Phases

Queue: 3s
Execution: 2m 11s
Stage/Unstage: 59s