NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122813270-122813419.bed) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
STRELKA_SINGLE (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122813270-122813419.bed)

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Task Info

Status: succeeded
Hash: 90a168d86873
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:STRELKA_SINGLE
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr12_122813270-122813419.bed
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 6e/5d46fc
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/strelka:2.9.10--h9ee0642_1
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/5d46fc350f859656d1e682b30b0342
Native ID: nf-6e5d46fc350f859656d1e682b30b0342-2704d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.6 / 10
Memory (peak / alloc): 603.1 MB / 20.0 GB
Process I/O (rchar / wchar): 3.2 GB / 21.5 MB
Disk I/O (read / write): 208.4 MB / 16.2 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:35:04 AM
Completed: Jan 26, 2026 4:37:54 AM
Total Duration: 2m 49s

Phases

Queue: 47s
Execution: 1m 4s
Stage/Unstage: 58s

Attempt 3

Execution

Status: succeeded - cached
Hash: 23/398c90
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/strelka:2.9.10--h9ee0642_1
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/398c90f2151628de3697dedc065052
Native ID: nf-23398c90f2151628de3697dedc065052-f0961

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.4 / 10
Memory (peak / alloc): 563.9 MB / 8.0 GB
Process I/O (rchar / wchar): 1.5 GB / 9.8 MB
Disk I/O (read / write): 152.9 MB / 8.0 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:46 AM
Completed: Jan 26, 2026 12:05:55 AM
Total Duration: 3m 8s

Phases

Queue: 1m 17s
Execution: 48s
Stage/Unstage: 1m 3s

Attempt 2

Execution

Status: succeeded
Hash: 4b/ce07f1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/strelka:2.9.10--h9ee0642_1
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/ce07f113391ebcb62bf7354a200cd2
Native ID: nf-4bce07f113391ebcb62bf7354a200cd2-dce8d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 7.8 / 10
Memory (peak / alloc): 665.3 MB / 8.0 GB
Process I/O (rchar / wchar): 14.1 GB / 92.8 MB
Disk I/O (read / write): 9.1 GB / 64.1 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:46 AM
Completed: Jan 26, 2026 12:07:19 AM
Total Duration: 4m 32s

Phases

Queue: 1m 17s
Execution: 2m 19s
Stage/Unstage: 56s

Attempt 1

Execution

Status: succeeded
Hash: 6f/1bbb20
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/strelka:2.9.10--h9ee0642_1
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/1bbb20e61aba7071811c2eef19f729
Native ID: nf-6f1bbb20e61aba7071811c2eef19f729-73f86

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 7.2 / 10
Memory (peak / alloc): 675.1 MB / 8.0 GB
Process I/O (rchar / wchar): 14.1 GB / 103.4 MB
Disk I/O (read / write): 9.5 GB / 69.6 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:36:33 PM
Completed: Jan 25, 2026 10:41:43 PM
Total Duration: 5m 9s

Phases

Queue: 1m 18s
Execution: 2m 49s
Stage/Unstage: 1m 2s