NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr11_63291540-63291643) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GETPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr11_63291540-63291643)

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Task Info

Status: succeeded
Hash: 9ae5d9ad87a6
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_TUMOR
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30;chr11_63291540-63291643
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: ee/656b76
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/656b762fd6bdbc1f7f522314032cf6
Native ID: nf-ee656b762fd6bdbc1f7f522314032cf6-d86a1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 6
Memory (peak / alloc): 606.9 MB / 36.0 GB
Process I/O (rchar / wchar): 11.0 GB / 822.5 KB
Disk I/O (read / write): 11.0 GB / 832.0 KB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:51 AM
Completed: Jan 26, 2026 4:46:46 AM
Total Duration: 11m 54s

Phases

Queue: 3s
Execution: 6m 44s
Stage/Unstage: 5m 7s

Attempt 3

Execution

Status: succeeded
Hash: c8/3d55b6
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/3d55b677440d0ea9d697fa1565af81
Native ID: nf-c83d55b677440d0ea9d697fa1565af81-c0d98

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 6
Memory (peak / alloc): 588.0 MB / 36.0 GB
Process I/O (rchar / wchar): 41.8 GB / 1.2 MB
Disk I/O (read / write): 32.7 GB / 1.2 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:19 AM
Completed: Jan 26, 2026 2:57:14 AM
Total Duration: 31m 54s

Phases

Queue: 1m 29s
Execution: 25m 20s
Stage/Unstage: 5m 5s

Attempt 2

Execution

Status: aborted
Hash: 73/3a2e41
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/3a2e41435e1b30a0574a56186da5ad
Native ID: nf-733a2e41435e1b30a0574a56186da5ad-cea82

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:57 AM
Completed: Jan 26, 2026 1:14:28 AM
Total Duration: -

Phases

Queue: 17s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: aborted
Hash: 37/42deb8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/42deb8eac1a63f5900515f65bfb102
Native ID: nf-3742deb8eac1a63f5900515f65bfb102-097c8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:24 PM
Completed: Jan 25, 2026 11:41:05 PM
Total Duration: -

Phases

Queue: 8s
Execution: -
Stage/Unstage: -