|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_TIDDIT:TIDDIT_SV (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7m 48s |
12s |
6m 23s |
1m 13s |
8.1 GB |
299% |
65.8 GB |
2.1 GB |
0 bytes |
607.2 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
1m 0s |
31s |
20s |
8s |
2.7 GB |
1079% |
2.0 GB |
29.0 MB |
0 bytes |
22.7 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
2m 44s |
2s |
2m 17s |
25s |
1.3 GB |
118% |
2.0 GB |
2.6 MB |
0 bytes |
2.6 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
- |
- |
9.7 MB |
133% |
1.1 MB |
144.8 KB |
0 bytes |
148.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
2s |
- |
- |
9.2 MB |
126% |
1.8 MB |
151.9 KB |
0 bytes |
156.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
- |
- |
3.3 MB |
107% |
162.2 KB |
12.8 KB |
0 bytes |
16.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
5s |
4s |
- |
- |
9.5 MB |
144% |
1.8 MB |
152.0 KB |
0 bytes |
156.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
- |
- |
3.3 MB |
56% |
128.8 KB |
7.3 KB |
0 bytes |
12.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
9s |
8s |
0s |
0s |
22.9 MB |
3887% |
1.2 MB |
39.0 KB |
0 bytes |
44.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
0s |
0s |
20.0 MB |
3592% |
2.0 MB |
43.2 KB |
0 bytes |
48.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
5s |
4s |
0s |
0s |
29.5 MB |
4788% |
227.7 KB |
719 bytes |
0 bytes |
4.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
0s |
0s |
27.0 MB |
4922% |
188.9 KB |
2.0 KB |
0 bytes |
8.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
0s |
0s |
22.6 MB |
3233% |
2.0 MB |
44.1 KB |
0 bytes |
48.0 KB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
5s |
3s |
0s |
1s |
13.8 MB |
3624% |
31.3 MB |
377.5 KB |
0 bytes |
388.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
5s |
3s |
1s |
0s |
14.4 MB |
3364% |
32.9 MB |
224.2 KB |
0 bytes |
232.0 KB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7s |
4s |
2s |
0s |
100.8 MB |
663% |
42.8 MB |
8.7 MB |
0 bytes |
8.7 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
11s |
8s |
2s |
0s |
101.1 MB |
705% |
38.5 MB |
4.9 MB |
0 bytes |
4.9 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7s |
3s |
2s |
1s |
101.1 MB |
668% |
42.4 MB |
8.2 MB |
0 bytes |
8.2 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 16s |
3s |
2m 14s |
59s |
481.1 MB |
100% |
30.4 GB |
13.8 MB |
30.2 GB |
13.8 MB |
3 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 16s |
5s |
2m 14s |
57s |
481.0 MB |
100% |
30.4 GB |
11.8 MB |
30.2 GB |
11.8 MB |
4 |