NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MERGE_STRELKA_GENOME (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: a0a603604996
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: e0/b30fe8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/b30fe87254f324ae5ac1eca634ce1f
Native ID: nf-e0b30fe87254f324ae5ac1eca634ce1f-817c3

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.2 / 2
Memory (peak / alloc): 618.8 MB / 4.0 GB
Process I/O (rchar / wchar): 115.9 MB / 23.5 MB
Disk I/O (read / write): - / 23.5 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:39:10 AM
Completed: Jan 26, 2026 4:39:24 AM
Total Duration: 13s

Phases

Queue: 3s
Execution: 7s
Stage/Unstage: 3s

Attempt 2

Execution

Status: succeeded - cached
Hash: cc/d4cc60
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/d4cc60fd3aeb1e144d93c24bf9ea15
Native ID: nf-ccd4cc60fd3aeb1e144d93c24bf9ea15-1aaff

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.5 / 2
Memory (peak / alloc): 510.7 MB / 4.0 GB
Process I/O (rchar / wchar): 115.6 MB / 23.5 MB
Disk I/O (read / write): - / 23.5 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:08:25 AM
Completed: Jan 26, 2026 12:08:37 AM
Total Duration: 11s

Phases

Queue: 2s
Execution: 7s
Stage/Unstage: 2s

Attempt 1

Execution

Status: succeeded
Hash: 2a/352c2b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/352c2bad1887d61b05b1bc78204d00
Native ID: nf-2a352c2bad1887d61b05b1bc78204d00-7c5e5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 2
Memory (peak / alloc): 501.7 MB / 4.0 GB
Process I/O (rchar / wchar): 115.6 MB / 23.5 MB
Disk I/O (read / write): - / 23.5 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:42:02 PM
Completed: Jan 25, 2026 10:42:15 PM
Total Duration: 12s

Phases

Queue: 3s
Execution: 7s
Stage/Unstage: 2s