NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
FILTERVARIANTTRANCHES (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: a52a855101ae
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: 16/94c7db
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/94c7db63e6e291daf5b81a412c26a4
Native ID: nf-1694c7db63e6e291daf5b81a412c26a4-3f712

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 1.3 GB / 12.0 GB
Process I/O (rchar / wchar): 2.0 GB / 2.6 MB
Disk I/O (read / write): - / 2.6 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:40:40 AM
Completed: Jan 26, 2026 4:43:25 AM
Total Duration: 2m 44s

Phases

Queue: 2s
Execution: 2m 17s
Stage/Unstage: 25s

Attempt 2

Execution

Status: succeeded - cached
Hash: 37/cfecf9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/cfecf9c189c14611dce4ec5e1d6b64
Native ID: nf-37cfecf9c189c14611dce4ec5e1d6b64-7f4a9

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 1.6 GB / 12.0 GB
Process I/O (rchar / wchar): 2.0 GB / 2.6 MB
Disk I/O (read / write): - / 2.6 MB
Host: i-09ac7814b40862fcb ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:54:05 AM
Completed: Jan 26, 2026 12:57:21 AM
Total Duration: 3m 15s

Phases

Queue: 5s
Execution: 2m 23s
Stage/Unstage: 47s

Attempt 1

Execution

Status: succeeded
Hash: 65/18df60
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/18df60bcff83dc4adc99cc4d362930
Native ID: nf-6518df60bcff83dc4adc99cc4d362930-56cae

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 1.2 GB / 12.0 GB
Process I/O (rchar / wchar): 2.0 GB / 2.6 MB
Disk I/O (read / write): - / 2.6 MB
Host: i-00e15b575a975497d ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:26:43 PM
Completed: Jan 25, 2026 11:29:48 PM
Total Duration: 3m 4s

Phases

Queue: 6s
Execution: 2m 29s
Stage/Unstage: 29s